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Zinc in PDB 8c6v: The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus

Protein crystallography data

The structure of The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus, PDB code: 8c6v was solved by S.Hamo, M.Dessau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.09 / 2.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.96, 152.39, 65.4, 90, 101.01, 90
R / Rfree (%) 20 / 23.4

Zinc Binding Sites:

The binding sites of Zinc atom in the The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus (pdb code 8c6v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus, PDB code: 8c6v:

Zinc binding site 1 out of 1 in 8c6v

Go back to Zinc Binding Sites List in 8c6v
Zinc binding site 1 out of 1 in the The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn203

b:65.0
occ:1.00
N D:HIS0 2.1 63.0 1.0
O C:GLY-1 2.2 57.6 1.0
ND1 D:HIS0 2.3 58.4 1.0
N C:GLY-1 2.3 62.5 1.0
N D:GLY-1 2.4 58.1 1.0
CA C:GLY-1 2.7 57.9 1.0
C C:GLY-1 2.8 57.9 1.0
C D:GLY-1 3.0 62.7 1.0
CG D:HIS0 3.0 58.0 1.0
CA D:GLY-1 3.1 60.5 1.0
CA D:HIS0 3.1 60.2 1.0
CB D:HIS0 3.1 54.9 1.0
CE1 D:HIS0 3.4 62.6 1.0
N D:MET1 3.9 60.5 1.0
C D:HIS0 4.0 60.6 1.0
N C:HIS0 4.1 56.7 1.0
O D:GLY-1 4.2 64.6 1.0
CD2 D:HIS0 4.3 62.3 1.0
NE2 D:HIS0 4.4 66.6 1.0
O D:HOH331 4.5 58.5 1.0
O C:HIS0 4.6 54.9 1.0
C C:HIS0 4.9 59.7 1.0
CA C:HIS0 4.9 58.4 1.0

Reference:

S.Hamo, L.S.Izahaki-Tavor, M.Dessau. The Rna Silencing Suppressor P8 From High-Plains Wheat Mosaic Virus, Is A Functional Tetramer To Be Published.
Page generated: Wed Oct 30 18:35:55 2024

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