Zinc in PDB 8a5y: S. Cerevisiae Apo Unphosphorylated Apc/C
Zinc Binding Sites:
The binding sites of Zinc atom in the S. Cerevisiae Apo Unphosphorylated Apc/C
(pdb code 8a5y). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the
S. Cerevisiae Apo Unphosphorylated Apc/C, PDB code: 8a5y:
Jump to Zinc binding site number:
1;
2;
3;
Zinc binding site 1 out
of 3 in 8a5y
Go back to
Zinc Binding Sites List in 8a5y
Zinc binding site 1 out
of 3 in the S. Cerevisiae Apo Unphosphorylated Apc/C
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of S. Cerevisiae Apo Unphosphorylated Apc/C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Zn201
b:925.6
occ:1.00
|
ND1
|
U:HIS76
|
2.1
|
955.7
|
1.0
|
SG
|
U:CYS55
|
2.3
|
868.9
|
1.0
|
SG
|
U:CYS52
|
2.3
|
902.8
|
1.0
|
SG
|
U:CYS62
|
2.3
|
857.4
|
1.0
|
CE1
|
U:HIS76
|
3.0
|
955.7
|
1.0
|
CG
|
U:HIS76
|
3.0
|
955.7
|
1.0
|
CB
|
U:CYS55
|
3.3
|
868.9
|
1.0
|
CB
|
U:CYS62
|
3.4
|
857.4
|
1.0
|
CB
|
U:HIS76
|
3.4
|
955.7
|
1.0
|
CB
|
U:CYS52
|
3.6
|
902.8
|
1.0
|
CA
|
U:CYS62
|
3.8
|
857.4
|
1.0
|
NE2
|
U:HIS76
|
4.0
|
955.7
|
1.0
|
OG
|
U:SER54
|
4.0
|
892.5
|
1.0
|
CD2
|
U:HIS76
|
4.1
|
955.7
|
1.0
|
N
|
U:CYS52
|
4.2
|
902.8
|
1.0
|
N
|
U:CYS55
|
4.4
|
868.9
|
1.0
|
CA
|
U:CYS55
|
4.4
|
868.9
|
1.0
|
CA
|
U:CYS52
|
4.4
|
902.8
|
1.0
|
N
|
U:HIS76
|
4.5
|
955.7
|
1.0
|
O
|
U:GLN61
|
4.5
|
811.0
|
1.0
|
CA
|
U:HIS76
|
4.6
|
955.7
|
1.0
|
ND1
|
U:HIS74
|
4.6
|
960.9
|
1.0
|
C
|
U:CYS62
|
4.7
|
857.4
|
1.0
|
CB
|
U:HIS74
|
4.7
|
960.9
|
1.0
|
N
|
U:CYS62
|
4.9
|
857.4
|
1.0
|
C
|
U:CYS52
|
5.0
|
902.8
|
1.0
|
O
|
U:CYS52
|
5.0
|
902.8
|
1.0
|
|
Zinc binding site 2 out
of 3 in 8a5y
Go back to
Zinc Binding Sites List in 8a5y
Zinc binding site 2 out
of 3 in the S. Cerevisiae Apo Unphosphorylated Apc/C
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of S. Cerevisiae Apo Unphosphorylated Apc/C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Zn202
b:998.0
occ:1.00
|
CG
|
U:HIS71
|
1.9
|
980.9
|
1.0
|
CD2
|
U:HIS71
|
2.0
|
980.9
|
1.0
|
SG
|
U:CYS91
|
2.3
|
8.9
|
1.0
|
SG
|
U:CYS94
|
2.3
|
997.2
|
1.0
|
SG
|
U:CYS69
|
2.4
|
975.7
|
1.0
|
ND1
|
U:HIS71
|
2.4
|
980.9
|
1.0
|
NE2
|
U:HIS71
|
2.5
|
980.9
|
1.0
|
CB
|
U:HIS71
|
2.7
|
980.9
|
1.0
|
CE1
|
U:HIS71
|
2.7
|
980.9
|
1.0
|
CB
|
U:CYS91
|
3.3
|
8.9
|
1.0
|
CB
|
U:CYS94
|
3.5
|
997.2
|
1.0
|
CB
|
U:CYS69
|
3.6
|
975.7
|
1.0
|
N
|
U:CYS94
|
4.1
|
997.2
|
1.0
|
CA
|
U:HIS71
|
4.1
|
980.9
|
1.0
|
CA
|
U:CYS94
|
4.4
|
997.2
|
1.0
|
N
|
U:HIS71
|
4.4
|
980.9
|
1.0
|
CB
|
U:MET93
|
4.5
|
998.9
|
1.0
|
O
|
U:CYS69
|
4.6
|
975.7
|
1.0
|
CA
|
U:CYS91
|
4.7
|
8.9
|
1.0
|
CA
|
U:CYS69
|
4.8
|
975.7
|
1.0
|
C
|
U:CYS69
|
4.8
|
975.7
|
1.0
|
CE2
|
U:PHE73
|
4.8
|
975.5
|
1.0
|
C
|
U:MET93
|
4.9
|
998.9
|
1.0
|
CZ
|
U:PHE73
|
4.9
|
975.5
|
1.0
|
SD
|
U:MET93
|
5.0
|
998.9
|
1.0
|
|
Zinc binding site 3 out
of 3 in 8a5y
Go back to
Zinc Binding Sites List in 8a5y
Zinc binding site 3 out
of 3 in the S. Cerevisiae Apo Unphosphorylated Apc/C
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of S. Cerevisiae Apo Unphosphorylated Apc/C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Zn203
b:980.3
occ:1.00
|
CG
|
U:HIS74
|
2.0
|
960.9
|
1.0
|
SG
|
U:CYS44
|
2.3
|
957.5
|
1.0
|
SG
|
U:CYS77
|
2.3
|
986.6
|
1.0
|
SG
|
U:CYS41
|
2.3
|
949.0
|
1.0
|
ND1
|
U:HIS74
|
2.4
|
960.9
|
1.0
|
CD2
|
U:HIS74
|
2.4
|
960.9
|
1.0
|
CB
|
U:HIS74
|
2.8
|
960.9
|
1.0
|
CE1
|
U:HIS74
|
2.8
|
960.9
|
1.0
|
NE2
|
U:HIS74
|
2.8
|
960.9
|
1.0
|
CB
|
U:CYS41
|
3.0
|
949.0
|
1.0
|
CB
|
U:CYS44
|
3.4
|
957.5
|
1.0
|
CB
|
U:CYS77
|
3.5
|
986.6
|
1.0
|
CB
|
U:CYS52
|
3.6
|
902.8
|
1.0
|
N
|
U:HIS74
|
4.0
|
960.9
|
1.0
|
CA
|
U:HIS74
|
4.0
|
960.9
|
1.0
|
N
|
U:CYS44
|
4.2
|
957.5
|
1.0
|
CA
|
U:CYS52
|
4.4
|
902.8
|
1.0
|
CA
|
U:CYS44
|
4.4
|
957.5
|
1.0
|
CA
|
U:CYS41
|
4.5
|
949.0
|
1.0
|
CA
|
U:CYS77
|
4.8
|
986.6
|
1.0
|
N
|
U:CYS52
|
4.9
|
902.8
|
1.0
|
|
Reference:
D.Barford,
E.Fernandez-Vazquez,
Z.Zhang,
J.Yang.
Cryo-Em Structure of the S. Cerevisiae Apc/C-CDH1 Complex and Comparison to Apo Unphosphorylated and Phosphorylated States To Be Published.
Page generated: Sat Apr 8 07:29:02 2023
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