Zinc in PDB 7zyc: Bekdgf with Zn

The structure of Bekdgf with Zn, PDB code: 7zyc was solved by F.Fredslund, D.Teze, D.H.Welner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.41 / 2.00
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	46.66, 46.66, 176.96, 90, 90, 120
R / Rfree (%)	22.8 / 26

The binding sites of Zinc atom in the Bekdgf with Zn (pdb code 7zyc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Bekdgf with Zn, PDB code: 7zyc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Bekdgf with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bekdgf with Zn within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:94.0 occ:0.80 OE1 A:GLN56 2.0 65.1 1.0 NE2 A:HIS90 2.1 73.1 1.0 NE2 A:HIS50 2.2 99.8 1.0 NE2 A:HIS52 2.2 86.9 1.0 O A:HOH301 2.2 76.1 1.0 CE1 A:HIS50 2.9 93.6 1.0 HE1 A:PHE104 3.0 72.8 1.0 HE1 A:HIS50 3.0 112.6 1.0 CE1 A:HIS90 3.0 73.8 1.0 CD A:GLN56 3.1 71.7 1.0 CD2 A:HIS90 3.1 73.9 1.0 CE1 A:HIS52 3.1 67.1 1.0 HE1 A:HIS90 3.2 88.8 1.0 CD2 A:HIS52 3.2 70.8 1.0 HE1 A:HIS52 3.2 80.8 1.0 CD2 A:HIS50 3.2 92.6 1.0 HD2 A:HIS90 3.3 88.9 1.0 HE21 A:GLN56 3.3 88.1 1.0 HD2 A:HIS52 3.4 85.3 1.0 HD2 A:HIS50 3.5 111.4 1.0 NE2 A:GLN56 3.6 73.2 1.0 CE1 A:PHE104 3.9 60.4 1.0 HH12 A:ARG108 3.9 88.4 1.0 HZ A:PHE104 3.9 68.9 1.0 O1 A:GOL201 4.0 75.2 1.0 ND1 A:HIS50 4.1 93.8 1.0 ND1 A:HIS90 4.2 69.5 1.0 HH11 A:ARG108 4.2 88.4 1.0 CG A:HIS90 4.2 69.3 1.0 ND1 A:HIS52 4.2 69.0 1.0 CG A:HIS50 4.3 90.5 1.0 NH1 A:ARG108 4.3 73.4 1.0 CZ A:PHE104 4.3 57.2 1.0 CG A:HIS52 4.3 71.9 1.0 HB2 A:GLN56 4.3 71.7 1.0 CG A:GLN56 4.4 58.8 1.0 HE22 A:GLN56 4.4 88.1 1.0 HB3 A:GLN56 4.6 71.7 1.0 CB A:GLN56 4.7 59.5 1.0 HG3 A:GLN56 4.7 70.8 1.0 HD1 A:HIS90 4.9 83.6 1.0 O2 A:GOL201 5.0 68.9 1.0

Zinc binding site 2 out of 2 in the Bekdgf with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Bekdgf with Zn within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:75.6 occ:0.25 OE1 A:GLN33 2.1 60.8 1.0 CD A:GLN33 3.2 52.8 1.0 HE21 A:GLN33 3.6 69.7 1.0 HG A:SER105 3.6 64.7 1.0 HB3 A:GLN33 3.8 65.8 1.0 NE2 A:GLN33 3.8 57.9 1.0 OG A:SER105 3.9 53.7 1.0 CG A:GLN33 4.4 52.5 1.0 CB A:GLN33 4.5 54.6 1.0 HE22 A:GLN33 4.6 69.7 1.0 HG3 A:GLN33 4.7 63.2 1.0 HA A:GLN33 4.9 60.7 1.0 HB3 A:PRO106 4.9 64.0 1.0

F.Fredslund, D.Teze, D.H.Welner. Bekdgf with Ca To Be Published.