Zinc in PDB 7zoq: Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator

The binding sites of Zinc atom in the Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator (pdb code 7zoq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator, PDB code: 7zoq:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1801 b:44.5 occ:1.00 SG B:CYS997 2.3 24.2 1.0 SG B:CYS1545 2.3 20.2 1.0 SG B:CYS1548 2.3 18.3 1.0 SG B:CYS1515 2.3 24.0 1.0 CB B:CYS1548 3.1 18.3 1.0 CB B:CYS1545 3.3 20.2 1.0 CB B:CYS1515 3.7 24.0 1.0 CB B:CYS997 3.7 24.2 1.0 N B:CYS1545 4.0 20.2 1.0 N B:CYS1548 4.0 18.3 1.0 N B:CYS1515 4.0 24.0 1.0 CA B:CYS1548 4.2 18.3 1.0 CA B:CYS1545 4.2 20.2 1.0 CA B:CYS1515 4.5 24.0 1.0 N B:CYS997 4.5 24.2 1.0 CG B:ARG999 4.6 22.4 1.0 CA B:CYS997 4.6 24.2 1.0 C B:CYS1545 4.8 20.2 1.0 NH1 B:ARG918 4.8 21.6 1.0 O B:CYS1545 4.8 20.2 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1802 b:113.5 occ:1.00 SG B:CYS140 2.3 37.7 1.0 SG B:CYS97 2.3 41.0 1.0 SG B:CYS137 2.3 42.8 1.0 SG B:CYS131 2.3 63.6 1.0 CB B:CYS140 3.2 37.7 1.0 CB B:CYS137 3.3 42.8 1.0 CB B:CYS131 3.4 63.6 1.0 CB B:CYS97 3.7 41.0 1.0 N B:CYS137 3.9 42.8 1.0 N B:CYS140 4.1 37.7 1.0 CA B:CYS137 4.1 42.8 1.0 N B:CYS97 4.2 41.0 1.0 CA B:CYS140 4.3 37.7 1.0 O B:CYS97 4.4 41.0 1.0 CA B:CYS97 4.4 41.0 1.0 O B:CYS137 4.6 42.8 1.0 C B:CYS97 4.7 41.0 1.0 C B:CYS137 4.7 42.8 1.0 CA B:CYS131 4.8 63.6 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1803 b:75.1 occ:1.00 SG B:CYS508 2.3 41.1 1.0 SG B:CYS498 2.3 34.0 1.0 SG B:CYS513 2.3 28.1 1.0 SG B:CYS510 2.3 30.2 1.0 O B:SER509 3.3 34.5 1.0 CB B:CYS508 3.5 41.1 1.0 CB B:CYS513 3.6 28.1 1.0 CB B:CYS498 3.8 34.0 1.0 CB B:CYS510 3.9 30.2 1.0 N B:CYS513 4.2 28.1 1.0 C B:SER509 4.4 34.5 1.0 CA B:CYS513 4.6 28.1 1.0 C B:CYS508 4.6 41.1 1.0 CA B:CYS508 4.7 41.1 1.0 O B:CYS508 4.7 41.1 1.0 CB B:VAL512 4.8 26.3 1.0 CA B:CYS510 4.9 30.2 1.0 O B:CYS510 5.0 30.2 1.0 N B:CYS510 5.0 30.2 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of A Crispr Effector in Complex with A Caspase Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1804 b:54.3 occ:1.00 CE1 B:HIS754 1.9 44.6 1.0 ND1 B:HIS754 2.1 44.6 1.0 SG B:CYS759 2.3 36.3 1.0 SG B:CYS757 2.3 51.7 1.0 SG B:CYS762 2.3 31.9 1.0 CB B:CYS757 3.2 51.7 1.0 CB B:CYS759 3.2 36.3 1.0 NE2 B:HIS754 3.2 44.6 1.0 CG B:HIS754 3.4 44.6 1.0 CB B:CYS762 3.5 31.9 1.0 N B:CYS759 3.8 36.3 1.0 CD2 B:HIS754 4.0 44.6 1.0 N B:CYS762 4.0 31.9 1.0 CA B:CYS759 4.0 36.3 1.0 CA B:CYS762 4.4 31.9 1.0 CA B:CYS757 4.5 51.7 1.0 CB B:HIS754 4.5 44.6 1.0 N B:SER758 4.5 44.7 1.0 C B:CYS757 4.6 51.7 1.0 CA B:HIS754 4.6 44.6 1.0 C B:CYS759 4.7 36.3 1.0 CB B:LEU761 4.8 26.0 1.0 O B:GLU753 4.9 43.7 1.0 CD B:ARG752 4.9 40.6 1.0 C B:SER758 4.9 44.7 1.0 C B:LEU761 5.0 26.0 1.0

E.E.Babatunde, T.Davide, B.Bertrand, N.Sergey, M.Alexander, S.Henning, C.N.Dong. Structural Insights Into the Regulation of CAS7-11 By Tpr-Chat To Be Published.