Zinc in PDB 7zdp: Complex I From Ovis Aries at PH9, Open State

Enzymatic activity of Complex I From Ovis Aries at PH9, Open State

All present enzymatic activity of Complex I From Ovis Aries at PH9, Open State:
7.1.1.2;

Other elements in 7zdp:

The structure of Complex I From Ovis Aries at PH9, Open State also contains other interesting chemical elements:

Iron (Fe) 28 atoms
Potassium (K) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex I From Ovis Aries at PH9, Open State (pdb code 7zdp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex I From Ovis Aries at PH9, Open State, PDB code: 7zdp:

Zinc binding site 1 out of 1 in 7zdp

Go back to Zinc Binding Sites List in 7zdp
Zinc binding site 1 out of 1 in the Complex I From Ovis Aries at PH9, Open State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex I From Ovis Aries at PH9, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Zn300

b:69.6
occ:1.00
NE2 b:HIS68 2.0 34.4 1.0
SG b:CYS59 2.3 87.0 1.0
SG b:CYS87 2.3 63.4 1.0
SG b:CYS84 2.3 112.5 1.0
CE1 b:HIS68 2.5 27.1 1.0
CD2 b:HIS68 3.2 31.9 1.0
CB b:CYS84 3.3 56.4 1.0
CB b:CYS59 3.4 52.4 1.0
CB b:CYS87 3.4 46.4 1.0
ND1 b:HIS68 3.6 22.0 1.0
N b:CYS87 3.8 42.1 1.0
CG b:HIS68 4.0 26.8 1.0
N b:GLY61 4.1 54.7 1.0
CA b:CYS87 4.2 40.3 1.0
C b:CYS59 4.3 49.9 1.0
CA b:CYS59 4.5 45.1 1.0
N b:ASP60 4.5 54.6 1.0
CA b:GLY61 4.5 52.5 1.0
O b:CYS59 4.5 54.2 1.0
CG2 b:VAL71 4.6 23.1 1.0
CB b:TYR86 4.6 34.3 1.0
CA b:CYS84 4.8 49.6 1.0
C b:ASP60 4.8 52.5 1.0
C b:TYR86 4.9 35.3 1.0
CA b:ASP60 5.0 51.6 1.0
N b:TYR86 5.0 27.9 1.0
C b:CYS87 5.0 35.8 1.0

Reference:

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7
Page generated: Sat Apr 8 06:35:33 2023

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