Zinc in PDB 7zdj: Complex I From Ovis Aries at PH5.5, Open State

Enzymatic activity of Complex I From Ovis Aries at PH5.5, Open State

All present enzymatic activity of Complex I From Ovis Aries at PH5.5, Open State:
7.1.1.2;

Other elements in 7zdj:

The structure of Complex I From Ovis Aries at PH5.5, Open State also contains other interesting chemical elements:

Iron (Fe) 28 atoms
Potassium (K) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex I From Ovis Aries at PH5.5, Open State (pdb code 7zdj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex I From Ovis Aries at PH5.5, Open State, PDB code: 7zdj:

Zinc binding site 1 out of 1 in 7zdj

Go back to Zinc Binding Sites List in 7zdj
Zinc binding site 1 out of 1 in the Complex I From Ovis Aries at PH5.5, Open State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex I From Ovis Aries at PH5.5, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Zn300

b:45.8
occ:1.00
NE2 b:HIS68 2.0 49.1 1.0
SG b:CYS87 2.3 45.9 1.0
SG b:CYS59 2.3 52.4 1.0
SG b:CYS84 2.3 46.0 1.0
CE1 b:HIS68 2.7 52.1 1.0
CD2 b:HIS68 3.1 38.4 1.0
CB b:CYS84 3.4 42.9 1.0
CB b:CYS87 3.4 37.2 1.0
CB b:CYS59 3.4 49.4 1.0
N b:GLY61 3.8 53.9 1.0
N b:CYS87 3.9 38.4 1.0
ND1 b:HIS68 3.9 47.4 1.0
CG b:HIS68 4.1 40.6 1.0
C b:CYS59 4.2 47.8 1.0
CA b:CYS87 4.2 34.1 1.0
CA b:GLY61 4.2 58.3 1.0
N b:ASP60 4.3 46.5 1.0
CA b:CYS59 4.4 46.8 1.0
O b:CYS59 4.5 48.9 1.0
C b:ASP60 4.5 53.1 1.0
CB b:TYR86 4.6 33.5 1.0
CA b:ASP60 4.7 46.2 1.0
CA b:CYS84 4.8 44.2 1.0
CG2 b:VAL71 4.8 41.9 1.0
C b:TYR86 5.0 38.0 1.0

Reference:

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7
Page generated: Sat Apr 8 06:35:34 2023

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