Zinc in PDB 7zbz: CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked

Zinc Binding Sites:

The binding sites of Zinc atom in the CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked (pdb code 7zbz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked, PDB code: 7zbz:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7zbz

Go back to Zinc Binding Sites List in 7zbz
Zinc binding site 1 out of 3 in the CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn201

b:84.9
occ:1.00
ND1 R:HIS80 2.0 69.9 1.0
SG R:CYS45 2.3 81.8 1.0
SG R:CYS42 2.3 79.0 1.0
SG R:CYS83 2.3 68.2 1.0
CE1 R:HIS80 2.8 69.9 1.0
CB R:CYS42 2.8 79.0 1.0
CG R:HIS80 3.2 69.9 1.0
CB R:CYS83 3.6 68.2 1.0
CB R:HIS80 3.6 69.9 1.0
CB R:CYS45 3.7 81.8 1.0
N R:CYS45 4.0 81.8 1.0
NE2 R:HIS80 4.0 69.9 1.0
O R:CYS45 4.1 81.8 1.0
CD2 R:HIS80 4.2 69.9 1.0
CA R:CYS45 4.3 81.8 1.0
N R:HIS80 4.3 69.9 1.0
CA R:CYS42 4.3 79.0 1.0
CA R:HIS80 4.6 69.9 1.0
C R:CYS45 4.7 81.8 1.0
SG R:CYS53 4.9 89.6 1.0
C R:CYS42 4.9 79.0 1.0
CA R:CYS83 5.0 68.2 1.0
CB R:ILE44 5.0 75.2 1.0

Zinc binding site 2 out of 3 in 7zbz

Go back to Zinc Binding Sites List in 7zbz
Zinc binding site 2 out of 3 in the CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn202

b:61.8
occ:1.00
OD2 R:ASP97 2.0 61.1 1.0
ND1 R:HIS77 2.0 51.9 1.0
SG R:CYS75 2.3 50.8 1.0
SG R:CYS94 2.3 59.1 1.0
CG R:ASP97 2.9 61.1 1.0
CE1 R:HIS77 2.9 51.9 1.0
CG R:HIS77 3.1 51.9 1.0
OD1 R:ASP97 3.3 61.1 1.0
CB R:CYS94 3.3 59.1 1.0
CB R:CYS75 3.3 50.8 1.0
CB R:HIS77 3.5 51.9 1.0
NE2 R:HIS77 4.1 51.9 1.0
CB R:ASP97 4.1 61.1 1.0
CD2 R:HIS77 4.2 51.9 1.0
N R:ASP97 4.3 61.1 1.0
O R:CYS75 4.6 50.8 1.0
CA R:CYS75 4.6 50.8 1.0
CB R:LEU96 4.7 58.0 1.0
C R:LEU96 4.7 58.0 1.0
CA R:ASP97 4.8 61.1 1.0
CA R:CYS94 4.8 59.1 1.0
C R:CYS75 4.8 50.8 1.0
CZ3 R:TRP101 4.8 53.9 1.0
CA R:HIS77 4.8 51.9 1.0
N R:LEU96 4.8 58.0 1.0
N R:HIS77 4.9 51.9 1.0
CA R:LEU96 5.0 58.0 1.0

Zinc binding site 3 out of 3 in 7zbz

Go back to Zinc Binding Sites List in 7zbz
Zinc binding site 3 out of 3 in the CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of CAND1 Delhairpin-Scf-SKP2 CAND1 Partly Engaged Scf Partly Rocked within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn203

b:87.8
occ:1.00
ND1 R:HIS82 2.0 72.1 1.0
SG R:CYS68 2.3 82.0 1.0
SG R:CYS56 2.3 92.4 1.0
SG R:CYS53 2.3 89.6 1.0
CB R:CYS53 2.9 89.6 1.0
CE1 R:HIS82 2.9 72.1 1.0
CG R:HIS82 3.1 72.1 1.0
CB R:HIS82 3.5 72.1 1.0
CB R:CYS68 3.6 82.0 1.0
N R:CYS53 3.6 89.6 1.0
CB R:CYS56 3.8 92.4 1.0
CA R:CYS53 3.9 89.6 1.0
NE2 R:HIS82 4.1 72.1 1.0
CD2 R:HIS82 4.2 72.1 1.0
CA R:CYS68 4.3 82.0 1.0
CA R:HIS82 4.8 72.1 1.0
C R:LEU52 4.8 88.0 1.0
N R:HIS82 4.8 72.1 1.0
CA R:CYS56 5.0 92.4 1.0

Reference:

K.Baek, D.C.Scott, L.T.Henneberg, M.T.King, M.Mann, B.A.Schulman. Systemwide Disassembly and Assembly of Scf Ubiquitin Ligase Complexes. Cell 2023.
ISSN: ISSN 1097-4172
PubMed: 37028429
DOI: 10.1016/J.CELL.2023.02.035
Page generated: Wed Apr 26 00:31:13 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy