Zinc in PDB 7ydi: Sars-Cov-2 Spike (6P) in Complex with 3 R1-32 Fabs and 3 ACE2, Focused Refinement of Rbd Region

The binding sites of Zinc atom in the Sars-Cov-2 Spike (6P) in Complex with 3 R1-32 Fabs and 3 ACE2, Focused Refinement of Rbd Region (pdb code 7ydi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sars-Cov-2 Spike (6P) in Complex with 3 R1-32 Fabs and 3 ACE2, Focused Refinement of Rbd Region, PDB code: 7ydi:

Zinc binding site 1 out of 1 in the Sars-Cov-2 Spike (6P) in Complex with 3 R1-32 Fabs and 3 ACE2, Focused Refinement of Rbd Region


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Spike (6P) in Complex with 3 R1-32 Fabs and 3 ACE2, Focused Refinement of Rbd Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:211.9 occ:1.00 OE1 A:GLU402 1.9 104.3 1.0 NE2 A:HIS378 2.3 98.2 1.0 NE2 A:HIS374 2.3 91.7 1.0 CD A:GLU402 2.8 103.0 1.0 OE2 A:GLU402 3.1 103.8 1.0 CD2 A:HIS374 3.2 89.4 1.0 CE1 A:HIS378 3.3 98.0 1.0 CD2 A:HIS378 3.3 98.0 1.0 CE1 A:HIS374 3.3 91.7 1.0 CG A:GLU402 4.2 100.0 1.0 OE2 A:GLU375 4.3 118.4 1.0 ND1 A:HIS378 4.4 97.4 1.0 CG A:HIS374 4.4 88.8 1.0 ND1 A:HIS374 4.4 89.4 1.0 CG A:HIS378 4.4 98.0 1.0 CB A:GLU402 4.7 98.4 1.0 CA A:GLU402 4.7 99.8 1.0

X.Xiong, L.Chen, J.He, X.Chen, X.Gao. SPIKE_GSAS_6P and R1-32 Fab with 3TO1 Ratio To Be Published.