Zinc in PDB 7y7o: Crystal Structure of Metallo-Endoribonuclease Ybey From Staphylococcus Aureus

The structure of Crystal Structure of Metallo-Endoribonuclease Ybey From Staphylococcus Aureus, PDB code: 7y7o was solved by J.Lee, N.-C.Ha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.59 / 1.90
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	100.663, 100.663, 50.187, 90, 90, 120
R / Rfree (%)	19.7 / 22.6

The binding sites of Zinc atom in the Crystal Structure of Metallo-Endoribonuclease Ybey From Staphylococcus Aureus (pdb code 7y7o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Metallo-Endoribonuclease Ybey From Staphylococcus Aureus, PDB code: 7y7o:

Zinc binding site 1 out of 1 in the Crystal Structure of Metallo-Endoribonuclease Ybey From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Metallo-Endoribonuclease Ybey From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:18.2 occ:1.00 O2 A:CIT202 2.1 16.4 1.0 O7 A:CIT202 2.1 12.7 1.0 O5 A:CIT202 2.2 13.9 1.0 NE2 A:HIS124 2.2 13.4 1.0 NE2 A:HIS120 2.2 11.5 1.0 NE2 A:HIS130 2.2 15.4 1.0 C6 A:CIT202 2.8 17.9 1.0 C3 A:CIT202 2.9 15.1 1.0 C1 A:CIT202 3.1 18.3 1.0 CD2 A:HIS120 3.1 13.9 1.0 CD2 A:HIS124 3.1 13.8 1.0 CE1 A:HIS130 3.2 21.2 1.0 CD2 A:HIS130 3.2 15.2 1.0 CE1 A:HIS120 3.2 15.2 1.0 CE1 A:HIS124 3.2 15.3 1.0 C2 A:CIT202 3.5 13.5 1.0 O6 A:CIT202 4.0 18.4 1.0 O3 A:CIT202 4.1 15.4 1.0 O1 A:CIT202 4.2 19.9 1.0 O A:HOH321 4.2 22.8 1.0 C4 A:CIT202 4.3 13.8 1.0 CG A:HIS120 4.3 10.7 1.0 CG A:HIS124 4.3 14.3 1.0 ND1 A:HIS120 4.3 12.1 1.0 ND1 A:HIS124 4.3 16.0 1.0 ND1 A:HIS130 4.3 17.2 1.0 CG A:HIS130 4.4 14.7 1.0 C5 A:CIT202 4.6 17.0 1.0 C4 A:CIT203 4.8 27.1 1.0 C2 A:CIT203 4.8 30.8 1.0

J.Lee, I.Jo, A.R.Kwon, N.C.Ha. Crystal Structure of the Metallo-Endoribonuclease Ybey From Staphylococcus Aureus. J Microbiol Biotechnol. V. 33 28 2023.
ISSN: ESSN 1738-8872
PubMed: 36457189
DOI: 10.4014/JMB.2209.09019