Zinc in PDB 7xy9: Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions

Enzymatic activity of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions

All present enzymatic activity of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions:
1.1.1.80;

Other elements in 7xy9:

The structure of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions (pdb code 7xy9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions, PDB code: 7xy9:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7xy9

Go back to Zinc Binding Sites List in 7xy9
Zinc binding site 1 out of 4 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:61.5
occ:1.00
 NE2 A:HIS59 2.1 27.8 1.0
OD1 A:ASP150 2.1 30.1 1.0
OE2 A:GLU60 2.3 30.1 1.0
SG A:CYS37 2.5 40.9 1.0
CE1 A:HIS59 2.7 27.4 1.0
CG A:ASP150 2.9 25.7 1.0
CB A:CYS37 3.1 24.4 1.0
CD2 A:HIS59 3.3 28.1 1.0
CD A:GLU60 3.4 23.6 1.0
CB A:ASP150 3.5 18.0 1.0
CE A:MET151 3.6 20.7 1.0
OD2 A:ASP150 3.9 39.4 1.0
ND1 A:HIS59 3.9 29.3 1.0
CG A:GLU60 3.9 22.6 1.0
O B:HOH734 4.1 42.9 1.0
CG A:HIS59 4.2 23.5 1.0
OG A:SER39 4.3 41.7 1.0
OE1 A:GLU60 4.4 35.2 1.0
CA A:CYS37 4.6 31.1 1.0
O A:HOH628 4.6 28.9 1.0
CB A:SER39 4.8 36.2 1.0
NZ A:LYS346 4.9 30.5 1.0

Zinc binding site 2 out of 4 in 7xy9

Go back to Zinc Binding Sites List in 7xy9
Zinc binding site 2 out of 4 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn503

b:56.3
occ:1.00
 NE2 B:HIS59 2.1 26.9 1.0
OE2 B:GLU60 2.3 27.1 1.0
SG B:CYS37 2.5 38.0 1.0
CE1 B:HIS59 2.7 25.4 1.0
OD1 B:ASP150 2.9 28.4 1.0
CG B:ASP150 3.0 24.3 1.0
CB B:CYS37 3.2 24.5 1.0
CD2 B:HIS59 3.3 25.7 1.0
OD2 B:ASP150 3.4 34.9 1.0
CD B:GLU60 3.4 23.3 1.0
CB B:ASP150 3.5 17.3 1.0
CE B:MET151 3.6 19.7 1.0
ND1 B:HIS59 3.9 26.8 1.0
CG B:GLU60 4.0 24.6 1.0
CG B:HIS59 4.2 21.4 1.0
OG B:SER39 4.3 38.1 1.0
OE1 B:GLU60 4.4 31.6 1.0
CA B:CYS37 4.6 29.9 1.0
CB B:SER39 4.9 34.4 1.0
NZ B:LYS346 4.9 28.5 1.0

Zinc binding site 3 out of 4 in 7xy9

Go back to Zinc Binding Sites List in 7xy9
Zinc binding site 3 out of 4 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn503

b:59.1
occ:1.00
 OD2 C:ASP150 2.0 29.6 1.0
NE2 C:HIS59 2.0 29.2 1.0
SG C:CYS37 2.4 40.1 1.0
CB C:CYS37 2.8 25.9 1.0
CE1 C:HIS59 2.9 27.4 1.0
OE1 C:GLU60 3.0 38.6 1.0
CG C:ASP150 3.1 24.7 1.0
CD2 C:HIS59 3.1 25.9 1.0
CD C:GLU60 3.2 29.1 1.0
OE2 C:GLU60 3.6 29.5 1.0
CE C:MET151 3.7 18.5 1.0
CB C:ASP150 3.7 15.8 1.0
CG C:GLU60 3.9 23.8 1.0
ND1 C:HIS59 4.0 30.9 1.0
OD1 C:ASP150 4.1 36.5 1.0
CG C:HIS59 4.2 23.2 1.0
OG C:SER39 4.2 40.1 1.0
CA C:CYS37 4.3 30.9 1.0
O D:HOH746 4.3 43.0 1.0
NZ C:LYS346 4.7 28.6 1.0
O C:HOH648 4.8 25.8 1.0
CB C:SER39 4.9 37.2 1.0
O C:HOH743 4.9 26.4 1.0

Zinc binding site 4 out of 4 in 7xy9

Go back to Zinc Binding Sites List in 7xy9
Zinc binding site 4 out of 4 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn503

b:60.4
occ:1.00
 OD2 D:ASP150 2.0 28.6 1.0
NE2 D:HIS59 2.1 27.5 1.0
OE2 D:GLU60 2.3 30.6 1.0
SG D:CYS37 2.4 40.9 1.0
CE1 D:HIS59 2.9 27.3 1.0
CB D:CYS37 2.9 27.6 1.0
CG D:ASP150 3.1 24.0 1.0
CD2 D:HIS59 3.1 26.4 1.0
CD D:GLU60 3.3 28.4 1.0
CE D:MET151 3.6 21.4 1.0
CB D:ASP150 3.7 16.6 1.0
CG D:GLU60 3.9 25.1 1.0
ND1 D:HIS59 4.0 30.4 1.0
OD1 D:ASP150 4.1 36.5 1.0
CG D:HIS59 4.2 24.4 1.0
OG D:SER39 4.2 41.0 1.0
OE1 D:GLU60 4.3 34.5 1.0
O C:HOH742 4.3 45.3 1.0
CA D:CYS37 4.4 31.2 1.0
NZ D:LYS346 4.7 30.9 1.0
O D:HOH655 4.8 27.7 1.0
CB D:SER39 4.9 36.7 1.0
O D:HOH745 4.9 25.5 1.0

Reference:

Q.Chen, X.Li, F.Yang, G.Qu, Z.T.Sun, Y.J.Wang. Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions To Be Published.
Page generated: Wed Oct 30 15:21:28 2024

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