Zinc in PDB 7wzb: Lipopolysaccharide Assembly Protein Lapb (Open)

The structure of Lipopolysaccharide Assembly Protein Lapb (Open), PDB code: 7wzb was solved by L.Yan, H.Dong, H.Li, X.Liu, Z.Deng, C.Dong, Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.46 / 2.70
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	72.08, 78.96, 124.03, 90, 90, 90
R / Rfree (%)	24.8 / 24.9

The binding sites of Zinc atom in the Lipopolysaccharide Assembly Protein Lapb (Open) (pdb code 7wzb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Lipopolysaccharide Assembly Protein Lapb (Open), PDB code: 7wzb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Lipopolysaccharide Assembly Protein Lapb (Open)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Lipopolysaccharide Assembly Protein Lapb (Open) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:57.2 occ:1.00 SG B:CYS360 2.3 59.4 1.0 SG B:CYS371 2.3 52.2 1.0 SG B:CYS374 2.3 67.3 1.0 SG B:CYS357 2.3 55.9 1.0 CB B:CYS371 3.2 55.6 1.0 CB B:CYS357 3.3 55.0 1.0 CB B:CYS374 3.3 52.5 1.0 CB B:CYS360 3.4 52.0 1.0 N B:CYS374 3.5 58.5 1.0 N B:CYS360 3.9 60.4 1.0 CA B:CYS374 4.0 55.1 1.0 CA B:CYS360 4.2 52.8 1.0 CB B:SER373 4.3 62.0 1.0 OG1 B:THR379 4.5 57.1 1.0 CB B:PHE362 4.5 51.9 1.0 C B:SER373 4.6 64.2 1.0 C B:CYS374 4.6 66.2 1.0 CA B:CYS371 4.6 56.9 1.0 CB B:LYS359 4.7 61.7 1.0 CA B:CYS357 4.7 56.0 1.0 OG B:SER373 4.7 62.2 1.0 C B:CYS360 4.8 60.5 1.0 N B:ARG375 4.9 61.2 1.0 CA B:SER373 4.9 57.0 1.0 C B:LYS359 4.9 64.0 1.0

Zinc binding site 2 out of 2 in the Lipopolysaccharide Assembly Protein Lapb (Open)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Lipopolysaccharide Assembly Protein Lapb (Open) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:74.4 occ:1.00 SG A:CYS371 2.3 73.7 1.0 SG A:CYS374 2.3 77.8 1.0 SG A:CYS357 2.3 74.6 1.0 SG A:CYS360 2.4 88.9 1.0 CB A:CYS371 3.1 64.3 1.0 OG A:SER373 3.1 85.3 1.0 CB A:CYS357 3.2 72.0 1.0 CB A:CYS374 3.5 76.8 1.0 N A:CYS374 3.7 68.9 1.0 CB A:CYS360 3.9 73.7 1.0 N A:CYS360 4.0 76.8 1.0 CA A:CYS374 4.2 77.3 1.0 CB A:PHE362 4.4 76.0 1.0 CA A:CYS360 4.5 74.2 1.0 CB A:LYS359 4.5 74.3 1.0 CB A:SER373 4.5 86.9 1.0 CA A:CYS371 4.5 71.1 1.0 OG1 A:THR379 4.5 73.9 1.0 CA A:CYS357 4.7 74.4 1.0 C A:SER373 4.8 72.7 1.0 C A:CYS374 4.8 82.2 1.0 C A:CYS360 5.0 88.7 1.0 N A:SER373 5.0 75.4 1.0 C A:CYS371 5.0 67.5 1.0

L.Yan, H.Dong, H.Li, X.Liu, Z.Deng, C.Dong, Z.Zhang. Lipopolysaccharide Assembly Protein Lapb (Open) To Be Published.