Zinc in PDB 7wtw: Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3 (pdb code 7wtw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3, PDB code: 7wtw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7wtw

Go back to Zinc Binding Sites List in 7wtw
Zinc binding site 1 out of 2 in the Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3 within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Zn500

b:28.1
occ:1.00
O f:VAL130 2.3 25.8 1.0
N f:MET132 2.9 27.7 1.0
N f:CYS121 3.0 26.8 1.0
CB f:MET132 3.0 27.7 1.0
CA f:MET132 3.0 27.7 1.0
C f:PHE131 3.1 29.9 1.0
C f:VAL130 3.4 25.8 1.0
O f:ARG119 3.4 29.5 1.0
CB f:CYS121 3.5 26.8 1.0
O f:PHE131 3.6 29.9 1.0
C f:GLU120 3.6 28.1 1.0
CA f:CYS121 3.7 26.8 1.0
CA f:PHE131 3.7 29.9 1.0
CA f:GLU120 3.8 28.1 1.0
SD f:MET132 3.8 27.7 1.0
CG f:MET132 3.8 27.7 1.0
N f:PHE131 4.0 29.9 1.0
C f:ARG119 4.1 29.5 1.0
N f:GLU120 4.3 28.1 1.0
SG f:CYS141 4.4 27.3 1.0
C f:MET132 4.6 27.7 1.0
O f:GLU120 4.6 28.1 1.0
CA f:VAL130 4.6 25.8 1.0
CB f:VAL130 4.7 25.8 1.0
CG1 f:VAL130 4.9 25.8 1.0
SG f:CYS121 5.0 26.8 1.0

Zinc binding site 2 out of 2 in 7wtw

Go back to Zinc Binding Sites List in 7wtw
Zinc binding site 2 out of 2 in the Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of A Human Pre-40S Ribosomal Subunit - State RRP12- A3 within 5.0Å range:
probe atom residue distance (Å) B Occ
y:Zn500

b:31.2
occ:1.00
SG y:CYS270 2.3 23.0 1.0
SG y:CYS273 2.3 25.1 1.0
SG y:CYS285 2.3 23.4 1.0
SG y:CYS288 2.3 24.2 1.0
CB y:CYS270 3.1 23.0 1.0
CB y:CYS285 3.2 23.4 1.0
CB y:CYS288 3.4 24.2 1.0
CB y:CYS273 3.5 25.1 1.0
N y:CYS288 3.8 24.2 1.0
N y:CYS273 3.8 25.1 1.0
CG2 y:THR292 4.1 20.9 1.0
CA y:CYS273 4.1 25.1 1.0
CA y:CYS288 4.2 24.2 1.0
CA y:CYS270 4.6 23.0 1.0
CA y:CYS285 4.6 23.4 1.0
N y:GLY289 4.6 24.3 1.0
C y:CYS273 4.6 25.1 1.0
N y:HIS287 4.8 25.8 1.0
C y:GLY272 4.8 21.9 1.0
N y:PHE274 4.8 24.4 1.0
C y:HIS287 4.9 25.8 1.0
C y:CYS288 4.9 24.2 1.0
N y:SER286 4.9 24.7 1.0
N y:GLY272 5.0 21.9 1.0
CB y:HIS287 5.0 25.8 1.0

Reference:

J.Cheng, B.Lau, M.Thoms, M.Ameismeier, O.Berninghausen, E.Hurt, R.Beckmann. The Nucleoplasmic Phase of Pre-40S Formation Prior to Nuclear Export. Nucleic Acids Res. V. 50 11924 2022.
ISSN: ESSN 1362-4962
PubMed: 36321656
DOI: 10.1093/NAR/GKAC961
Page generated: Sat Apr 8 05:31:29 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy