Zinc in PDB 7vyx: Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex

The structure of Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex, PDB code: 7vyx was solved by B.Zhang, J.Y.Lin, V.Perculija, S.Y.Ouyang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.73 / 3.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	93.127, 149.85, 173.246, 90, 91.59, 90
R / Rfree (%)	25.6 / 29.2

The binding sites of Zinc atom in the Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex (pdb code 7vyx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex, PDB code: 7vyx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1401 b:61.5 occ:1.00 CB A:CYS1256 1.9 93.0 1.0 CB A:CYS1251 2.2 95.0 1.0 SG A:CYS1251 2.2 92.8 1.0 CB A:CYS1152 2.5 97.8 1.0 CA A:CYS1256 3.0 95.0 1.0 SG A:CYS1256 3.0 86.1 1.0 SG A:CYS1149 3.1 79.9 1.0 SG A:CYS1152 3.1 98.9 1.0 CA A:CYS1152 3.4 101.5 1.0 N A:CYS1152 3.4 105.6 1.0 CB A:CYS1149 3.7 81.7 1.0 CA A:CYS1251 3.7 99.8 1.0 N A:CYS1256 3.9 95.9 1.0 C A:CYS1256 4.0 97.2 1.0 N A:ALA1257 4.3 97.8 1.0 C A:CYS1251 4.4 99.2 1.0 N A:CYS1251 4.5 103.0 1.0 CG A:LEU1258 4.6 112.5 1.0 C A:CYS1151 4.6 108.3 1.0 O A:CYS1251 4.7 99.5 1.0 CD1 A:LEU1258 4.8 114.3 1.0 C A:CYS1152 4.8 102.6 1.0 CB A:CYS1151 4.9 110.7 1.0 O A:CYS1256 4.9 98.8 1.0 N A:LEU1258 4.9 103.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1401 b:79.5 occ:1.00 CB B:CYS1152 2.0 86.7 1.0 SG B:CYS1149 2.1 110.6 1.0 CB B:CYS1149 2.2 95.8 1.0 SG B:CYS1256 2.4 106.0 1.0 CB B:CYS1256 2.4 109.7 1.0 CB B:CYS1251 2.6 88.2 1.0 SG B:CYS1251 2.9 69.8 1.0 SG B:CYS1152 2.9 83.4 1.0 CA B:CYS1152 3.4 91.4 1.0 CA B:CYS1149 3.5 86.9 1.0 N B:CYS1152 3.7 91.7 1.0 CA B:CYS1251 3.8 97.1 1.0 CA B:CYS1256 4.0 112.6 1.0 C B:CYS1152 4.2 96.2 1.0 CD1 B:LEU1258 4.3 136.0 1.0 C B:CYS1149 4.3 84.2 1.0 N B:CYS1149 4.5 80.7 1.0 O B:CYS1152 4.6 102.0 1.0 N B:CYS1256 4.6 111.9 1.0 CB B:LEU1258 4.7 127.0 1.0 C B:CYS1251 4.7 105.5 1.0 OH B:TYR1249 4.8 67.9 1.0 O B:CYS1149 4.8 76.8 1.0 C B:CYS1256 4.8 114.7 1.0 N B:GLY1153 4.8 96.3 1.0 CG B:LEU1258 4.9 133.9 1.0 N B:CYS1251 4.9 101.2 1.0 N B:VAL1252 5.0 114.7 1.0 CB B:TYR1253 5.0 105.0 1.0 C B:CYS1151 5.0 95.3 1.0

B.Zhang, J.Y.Lin, V.Perculija, S.Y.Ouyang. Crystal Structure of the Selenomethionine(Semet)-Derived CAS12C1 (D969A) Ternary Complex To Be Published.