Zinc in PDB 7vyf: Matrix Arm of Active State Ci From Rotenone Dataset

All present enzymatic activity of Matrix Arm of Active State Ci From Rotenone Dataset:
7.1.1.2;

The structure of Matrix Arm of Active State Ci From Rotenone Dataset also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Iron	(Fe)	28 atoms

The binding sites of Zinc atom in the Matrix Arm of Active State Ci From Rotenone Dataset (pdb code 7vyf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Matrix Arm of Active State Ci From Rotenone Dataset, PDB code: 7vyf:

Zinc binding site 1 out of 1 in the Matrix Arm of Active State Ci From Rotenone Dataset


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Matrix Arm of Active State Ci From Rotenone Dataset within 5.0Å range: probe atom residue distance (Å) B Occ T:Zn201 b:42.7 occ:1.00 SG T:CYS86 2.3 23.1 1.0 SG T:CYS111 2.3 25.7 1.0 NE2 T:HIS95 2.3 17.2 1.0 CB T:CYS114 2.7 27.1 1.0 CE1 T:HIS95 3.1 17.2 1.0 CB T:CYS111 3.2 25.7 1.0 CD2 T:HIS95 3.4 17.2 1.0 CB T:CYS86 3.5 23.1 1.0 N T:CYS114 3.5 27.1 1.0 CA T:CYS114 3.7 27.1 1.0 N T:GLY88 3.9 20.1 1.0 SG T:CYS114 4.0 27.1 1.0 CA T:GLY88 4.1 20.1 1.0 ND1 T:HIS95 4.3 17.2 1.0 CG T:HIS95 4.4 17.2 1.0 C T:CYS86 4.6 23.1 1.0 CB T:TYR113 4.6 15.9 1.0 C T:CYS114 4.6 27.1 1.0 CA T:CYS86 4.6 23.1 1.0 CA T:CYS111 4.6 25.7 1.0 C T:TYR113 4.6 15.9 1.0 O T:CYS86 4.8 23.1 1.0 C T:ASP87 4.8 21.5 1.0 N T:GLY115 4.8 28.5 1.0 N T:ASP87 4.8 21.5 1.0 CB T:LEU116 4.9 31.2 1.0 N T:TYR113 5.0 15.9 1.0 CD1 T:LEU116 5.0 31.2 1.0 CA T:TYR113 5.0 15.9 1.0

J.K.Gu, T.Liu, R.Guo, L.Zhang, M.J.Yang. The Coupling Mechanism of Mammalian Mitochondrial Complex I. Nat.Struct.Mol.Biol. V. 29 172 2022.
ISSN: ESSN 1545-9985
PubMed: 35145322
DOI: 10.1038/S41594-022-00722-W