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Zinc in PDB 7vvr: Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K

Enzymatic activity of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K

All present enzymatic activity of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K:
7.1.1.9;

Protein crystallography data

The structure of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K, PDB code: 7vvr was solved by A.Shimada, T.Tsukihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.95 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 182.307, 204.706, 177.379, 90, 90, 90
R / Rfree (%) 15.2 / 17.6

Other elements in 7vvr:

The structure of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 2 atoms
Copper (Cu) 6 atoms
Iron (Fe) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K (pdb code 7vvr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K, PDB code: 7vvr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7vvr

Go back to Zinc Binding Sites List in 7vvr
Zinc binding site 1 out of 2 in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn101

b:26.8
occ:1.00
SG F:CYS62 2.3 27.1 1.0
SG F:CYS82 2.3 27.2 1.0
SG F:CYS60 2.4 28.1 1.0
SG F:CYS85 2.4 29.1 1.0
CB F:CYS82 3.2 25.4 1.0
CB F:CYS62 3.3 25.7 1.0
CB F:CYS60 3.3 28.4 1.0
CB F:CYS85 3.3 26.6 1.0
CA F:CYS62 3.6 27.3 1.0
N F:CYS85 3.7 28.5 1.0
CA F:CYS85 4.1 25.6 1.0
N F:CYS62 4.1 28.5 1.0
O F:CYS60 4.3 25.6 1.0
C F:CYS60 4.4 29.7 1.0
CB F:SER84 4.4 28.9 1.0
CA F:CYS60 4.5 27.6 1.0
O F:HOH224 4.5 42.2 1.0
CG2 F:THR87 4.5 35.3 1.0
CA F:CYS82 4.6 26.1 1.0
OG F:SER84 4.7 35.9 1.0
C F:SER84 4.7 35.0 1.0
C F:CYS85 4.8 28.6 1.0
CG1 F:ILE70 4.9 25.6 1.0
C F:ILE61 4.9 29.6 1.0
CB F:ILE70 4.9 25.5 1.0
C F:CYS62 4.9 30.6 1.0
N F:SER84 4.9 26.8 1.0
CA F:SER84 5.0 29.9 1.0
N F:GLY86 5.0 27.9 1.0

Zinc binding site 2 out of 2 in 7vvr

Go back to Zinc Binding Sites List in 7vvr
Zinc binding site 2 out of 2 in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn101

b:28.4
occ:1.00
SG S:CYS60 2.3 27.8 1.0
SG S:CYS62 2.3 28.8 1.0
SG S:CYS82 2.3 28.3 1.0
SG S:CYS85 2.3 29.9 1.0
CB S:CYS82 3.2 28.3 1.0
CB S:CYS62 3.2 26.2 1.0
CB S:CYS60 3.3 26.9 1.0
CB S:CYS85 3.3 29.3 1.0
CA S:CYS62 3.6 26.8 1.0
N S:CYS85 3.7 28.4 1.0
CA S:CYS85 4.1 27.0 1.0
N S:CYS62 4.1 30.8 1.0
O S:CYS60 4.4 24.8 1.0
C S:CYS60 4.4 27.7 1.0
CA S:CYS60 4.4 26.4 1.0
CB S:SER84 4.5 31.4 1.0
CG2 S:THR87 4.5 37.2 1.0
O S:HOH246 4.5 39.0 1.0
CA S:CYS82 4.6 24.9 1.0
C S:SER84 4.7 33.1 1.0
OG S:SER84 4.8 36.5 1.0
C S:CYS85 4.8 28.4 1.0
C S:ILE61 4.9 26.8 1.0
CB S:ILE70 4.9 23.8 1.0
CG1 S:ILE70 4.9 25.2 1.0
N S:SER84 4.9 28.2 1.0
C S:CYS62 4.9 34.3 1.0
CA S:SER84 4.9 29.5 1.0
N S:GLY86 5.0 28.5 1.0

Reference:

A.Shimada, T.Tsukihara. Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K To Be Published.
Page generated: Sat Apr 8 05:02:41 2023

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