Zinc in PDB 7vo0: Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Zinc atom in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) (pdb code 7vo0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 18 binding sites of Zinc where determined in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers), PDB code: 7vo0:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 1 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:23.4
occ:1.00
SG G:CYS93 2.3 14.0 1.0
SG G:CYS90 2.3 14.1 1.0
SG G:CYS133 2.3 12.7 1.0
SG G:CYS130 2.3 13.9 1.0
CB G:CYS93 3.3 14.0 1.0
CB G:CYS130 3.4 13.9 1.0
CB G:CYS133 3.4 12.7 1.0
CB G:CYS90 3.7 14.1 1.0
N G:CYS93 3.9 14.0 1.0
NZ G:LYS95 3.9 11.0 1.0
N G:CYS130 4.0 13.9 1.0
OD2 G:ASP132 4.2 14.6 1.0
CB G:ALA92 4.2 12.5 1.0
CA G:CYS93 4.3 14.0 1.0
CA G:CYS130 4.3 13.9 1.0
C G:ALA92 4.5 12.5 1.0
CA G:CYS133 4.5 12.7 1.0
N G:CYS133 4.7 12.7 1.0
CA G:ALA92 4.8 12.5 1.0
N G:ALA92 5.0 12.5 1.0

Zinc binding site 2 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 2 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn202

b:13.7
occ:1.00
CE1 G:HIS87 2.0 6.3 1.0
NE2 G:HIS87 2.3 6.3 1.0
NE2 G:HIS85 2.3 9.1 1.0
SG G:CYS79 2.3 8.5 1.0
OD2 G:ASP65 2.7 8.3 1.0
CE1 G:HIS85 3.0 9.1 1.0
CD2 G:HIS85 3.2 9.1 1.0
CB G:ASP65 3.2 8.3 1.0
ND1 G:HIS87 3.3 6.3 1.0
CG G:ASP65 3.3 8.3 1.0
CB G:CYS79 3.6 8.5 1.0
CD2 G:HIS87 3.7 6.3 1.0
ND1 G:HIS85 3.9 9.1 1.0
CG G:HIS85 4.1 9.1 1.0
CG G:HIS87 4.1 6.3 1.0
OD1 G:ASP65 4.4 8.3 1.0
CA G:ASP65 4.7 8.3 1.0
O G:HIS85 4.9 9.1 1.0
CA G:CYS79 4.9 8.5 1.0

Zinc binding site 3 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 3 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn203

b:14.1
occ:1.00
OE2 G:GLU105 2.0 13.3 1.0
NE2 G:HIS86 2.3 13.8 1.0
NE2 G:HIS122 2.3 9.5 1.0
NE2 G:HIS84 2.3 14.0 1.0
CE1 G:HIS84 2.7 14.0 1.0
CD2 G:HIS86 2.9 13.8 1.0
CD2 G:HIS122 3.0 9.5 1.0
CD G:GLU105 3.2 13.3 1.0
CE1 G:HIS86 3.3 13.8 1.0
CE1 G:HIS122 3.4 9.5 1.0
CD2 G:HIS84 3.6 14.0 1.0
OE1 G:GLU105 4.0 13.3 1.0
ND1 G:HIS84 4.0 14.0 1.0
CG G:HIS86 4.1 13.8 1.0
CG G:GLU105 4.1 13.3 1.0
CG G:HIS122 4.2 9.5 1.0
ND1 G:HIS86 4.2 13.8 1.0
ND1 G:HIS122 4.4 9.5 1.0
CG G:HIS84 4.4 14.0 1.0
CG2 G:VAL104 4.7 12.8 1.0

Zinc binding site 4 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 4 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn201

b:23.7
occ:1.00
CB H:CYS130 1.7 14.7 1.0
SG H:CYS93 2.3 15.8 1.0
SG H:CYS133 2.3 13.9 1.0
SG H:CYS90 2.3 15.1 1.0
SG H:CYS130 2.3 14.7 1.0
CA H:CYS130 3.2 14.7 1.0
CB H:CYS93 3.4 15.8 1.0
OD1 H:ASP132 3.6 13.8 1.0
CB H:CYS90 3.7 15.1 1.0
NZ H:LYS95 3.8 12.6 1.0
N H:CYS130 3.8 14.7 1.0
N H:CYS93 4.0 15.8 1.0
C H:CYS130 4.1 14.7 1.0
CB H:CYS133 4.1 13.9 1.0
CB H:ALA92 4.2 16.6 1.0
CA H:CYS93 4.4 15.8 1.0
C H:ALA92 4.4 16.6 1.0
N H:CYS133 4.6 13.9 1.0
O H:CYS130 4.6 14.7 1.0
N H:ALA131 4.7 12.9 1.0
CA H:ALA92 4.8 16.6 1.0
CG H:ASP132 4.8 13.8 1.0
CA H:CYS133 4.9 13.9 1.0
N H:ALA92 4.9 16.6 1.0
CE H:LYS95 4.9 12.6 1.0

Zinc binding site 5 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 5 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn202

b:16.8
occ:1.00
NE2 H:HIS85 1.9 14.3 1.0
OD2 H:ASP65 2.0 10.2 1.0
SG H:CYS79 2.3 12.3 1.0
NE2 H:HIS87 2.3 9.2 1.0
CD2 H:HIS85 2.8 14.3 1.0
CE1 H:HIS85 2.9 14.3 1.0
CB H:CYS79 2.9 12.3 1.0
CE1 H:HIS87 3.1 9.2 1.0
CG H:ASP65 3.2 10.2 1.0
CD2 H:HIS87 3.3 9.2 1.0
ND1 H:HIS85 3.8 14.3 1.0
CG H:HIS85 3.8 14.3 1.0
OD1 H:ASP65 4.1 10.2 1.0
CB H:ASP65 4.1 10.2 1.0
ND1 H:HIS87 4.3 9.2 1.0
CG H:HIS87 4.4 9.2 1.0
CA H:CYS79 4.4 12.3 1.0
O H:HIS85 4.7 14.3 1.0
CG H:GLU98 4.8 13.6 1.0
O H:THR81 4.9 12.3 1.0
N H:CYS79 4.9 12.3 1.0

Zinc binding site 6 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 6 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn203

b:21.4
occ:1.00
OE2 H:GLU105 2.0 14.7 1.0
NE2 H:HIS86 2.3 13.8 1.0
NE2 H:HIS84 2.3 13.7 1.0
NE2 H:HIS122 2.3 10.8 1.0
CD2 H:HIS122 2.7 10.8 1.0
CD2 H:HIS86 2.8 13.8 1.0
CE1 H:HIS84 2.9 13.7 1.0
CD H:GLU105 3.2 14.7 1.0
CE1 H:HIS86 3.4 13.8 1.0
CE1 H:HIS122 3.5 10.8 1.0
CD2 H:HIS84 3.5 13.7 1.0
CG2 H:VAL104 3.9 12.1 1.0
CG H:HIS122 4.0 10.8 1.0
OE1 H:GLU105 4.0 14.7 1.0
CG H:HIS86 4.1 13.8 1.0
CG H:GLU105 4.1 14.7 1.0
ND1 H:HIS84 4.2 13.7 1.0
ND1 H:HIS122 4.3 10.8 1.0
ND1 H:HIS86 4.3 13.8 1.0
CG H:HIS84 4.5 13.7 1.0
O H:GLY101 4.9 9.5 1.0

Zinc binding site 7 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 7 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn201

b:20.9
occ:1.00
CB K:CYS130 1.7 14.1 1.0
SG K:CYS93 2.3 11.6 1.0
SG K:CYS133 2.3 13.8 1.0
SG K:CYS90 2.3 14.6 1.0
SG K:CYS130 2.3 14.1 1.0
CA K:CYS130 3.2 14.1 1.0
CB K:CYS93 3.5 11.6 1.0
CB K:CYS90 3.6 14.6 1.0
N K:CYS130 3.7 14.1 1.0
OD1 K:ASP132 3.8 11.5 1.0
CB K:CYS133 4.1 13.8 1.0
N K:CYS93 4.1 11.6 1.0
C K:CYS130 4.1 14.1 1.0
CB K:ALA92 4.2 12.8 1.0
CA K:CYS93 4.4 11.6 1.0
C K:ALA92 4.6 12.8 1.0
O K:CYS130 4.6 14.1 1.0
N K:CYS133 4.7 13.8 1.0
N K:ALA131 4.9 13.3 1.0
CA K:ALA92 4.9 12.8 1.0
CA K:CYS133 4.9 13.8 1.0
CA K:CYS90 5.0 14.6 1.0

Zinc binding site 8 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 8 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn202

b:11.6
occ:1.00
OD2 K:ASP65 2.0 6.9 1.0
SG K:CYS79 2.3 10.2 1.0
NE2 K:HIS85 2.3 12.9 1.0
NE2 K:HIS87 2.3 6.8 1.0
CE1 K:HIS85 2.6 12.9 1.0
CB K:CYS79 2.8 10.2 1.0
CE1 K:HIS87 3.0 6.8 1.0
CG K:ASP65 3.2 6.9 1.0
CD2 K:HIS87 3.5 6.8 1.0
CD2 K:HIS85 3.5 12.9 1.0
ND1 K:HIS85 3.9 12.9 1.0
OD1 K:ASP65 4.0 6.9 1.0
CB K:ASP65 4.2 6.9 1.0
ND1 K:HIS87 4.2 6.8 1.0
CA K:CYS79 4.3 10.2 1.0
CG K:HIS85 4.3 12.9 1.0
CG K:HIS87 4.5 6.8 1.0
NH2 K:ARG77 4.6 8.9 1.0
N K:CYS79 4.8 10.2 1.0
CG K:GLU98 4.9 10.5 1.0

Zinc binding site 9 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 9 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn203

b:23.0
occ:1.00
OE2 K:GLU105 2.3 12.2 1.0
NE2 K:HIS122 2.3 15.3 1.0
NE2 K:HIS84 2.3 10.7 1.0
NE2 K:HIS86 2.3 14.1 1.0
OE1 K:GLU105 2.4 12.2 1.0
CD K:GLU105 2.4 12.2 1.0
CD2 K:HIS86 2.7 14.1 1.0
CD2 K:HIS122 2.8 15.3 1.0
CE1 K:HIS84 3.1 10.7 1.0
CD2 K:HIS84 3.4 10.7 1.0
CE1 K:HIS122 3.5 15.3 1.0
CE1 K:HIS86 3.6 14.1 1.0
CG K:GLU105 3.7 12.2 1.0
CG K:HIS86 4.0 14.1 1.0
CG K:HIS122 4.1 15.3 1.0
ND1 K:HIS84 4.2 10.7 1.0
CG K:HIS84 4.4 10.7 1.0
ND1 K:HIS86 4.4 14.1 1.0
ND1 K:HIS122 4.4 15.3 1.0
O K:HIS85 4.7 12.9 1.0
C K:HIS85 4.9 12.9 1.0
CB K:GLU105 5.0 12.2 1.0

Zinc binding site 10 out of 18 in 7vo0

Go back to Zinc Binding Sites List in 7vo0
Zinc binding site 10 out of 18 in the Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Streptomyces Coelicolor Zinc Uptake Regulator Complexed with Zinc and Dna (Trimer of Dimers) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn201

b:16.9
occ:1.00
CB L:CYS130 1.9 15.4 1.0
SG L:CYS133 2.3 12.8 1.0
SG L:CYS90 2.3 14.0 1.0
SG L:CYS93 2.3 15.1 1.0
SG L:CYS130 2.3 15.4 1.0
CB L:CYS93 3.0 15.1 1.0
CA L:CYS130 3.4 15.4 1.0
OD1 L:ASP132 3.6 14.6 1.0
CB L:CYS90 3.6 14.0 1.0
NZ L:LYS95 3.8 13.0 1.0
N L:CYS93 3.8 15.1 1.0
N L:CYS130 4.0 15.4 1.0
CA L:CYS93 4.0 15.1 1.0
CB L:CYS133 4.1 12.8 1.0
C L:CYS130 4.1 15.4 1.0
N L:CYS133 4.5 12.8 1.0
O L:CYS130 4.7 15.4 1.0
N L:ALA131 4.7 12.5 1.0
CA L:CYS133 4.7 12.8 1.0
CG L:ASP132 4.8 14.6 1.0
CA L:CYS90 5.0 14.0 1.0

Reference:

X.Yang, Y.Wang, G.Liu, Z.Deng, S.Lin, J.Zheng. Structural Basis of Streptomyces Transcription Activation By Zinc Uptake Regulator. Nucleic Acids Res. V. 50 8363 2022.
ISSN: ESSN 1362-4962
PubMed: 35871291
DOI: 10.1093/NAR/GKAC627
Page generated: Sat Apr 8 04:44:24 2023

Last articles

Cd in 4EFP
Cd in 4DE6
Cd in 4E89
Cd in 4DZI
Cd in 4DKI
Cd in 4CVU
Cd in 4C0R
Cd in 4CZR
Cd in 4D7Y
Cd in 4CZQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy