Atomistry » Zinc » PDB 7v37-7vo9 » 7vb7
Atomistry »
  Zinc »
    PDB 7v37-7vo9 »
      7vb7 »

Zinc in PDB 7vb7: Matrix Arm of Active State Ci From Dq-Nadh Dataset

Enzymatic activity of Matrix Arm of Active State Ci From Dq-Nadh Dataset

All present enzymatic activity of Matrix Arm of Active State Ci From Dq-Nadh Dataset:
7.1.1.2;

Other elements in 7vb7:

The structure of Matrix Arm of Active State Ci From Dq-Nadh Dataset also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iron (Fe) 28 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Matrix Arm of Active State Ci From Dq-Nadh Dataset (pdb code 7vb7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Matrix Arm of Active State Ci From Dq-Nadh Dataset, PDB code: 7vb7:

Zinc binding site 1 out of 1 in 7vb7

Go back to Zinc Binding Sites List in 7vb7
Zinc binding site 1 out of 1 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Zn201

b:24.7
occ:1.00
NE2 T:HIS95 2.3 9.7 1.0
SG T:CYS86 2.3 12.5 1.0
SG T:CYS111 2.3 13.2 1.0
CB T:CYS114 2.8 15.6 1.0
CE1 T:HIS95 3.1 9.7 1.0
CB T:CYS111 3.2 13.2 1.0
CD2 T:HIS95 3.4 9.7 1.0
CB T:CYS86 3.5 12.5 1.0
N T:GLY88 3.8 11.2 1.0
N T:CYS114 3.8 15.6 1.0
CA T:CYS114 3.9 15.6 1.0
SG T:CYS114 3.9 15.6 1.0
CA T:GLY88 4.0 11.2 1.0
ND1 T:HIS95 4.3 9.7 1.0
C T:CYS86 4.4 12.5 1.0
CG T:HIS95 4.4 9.7 1.0
C T:ASP87 4.6 11.3 1.0
CA T:CYS86 4.6 12.5 1.0
N T:ASP87 4.6 11.3 1.0
CA T:CYS111 4.7 13.2 1.0
O T:CYS86 4.7 12.5 1.0
CB T:TYR113 4.7 9.6 1.0
C T:CYS114 4.8 15.6 1.0
C T:TYR113 4.9 9.6 1.0
CD1 T:LEU116 4.9 16.6 1.0
N T:GLY115 4.9 15.4 1.0
CA T:ASP87 5.0 11.3 1.0
CB T:LEU116 5.0 16.6 1.0

Reference:

J.Gu, T.Liu, R.Guo, L.Zhang, M.Yang. The Coupling Mechanism of Mammalian Mitochondrial Complex I. Nat.Struct.Mol.Biol. V. 29 172 2022.
ISSN: ESSN 1545-9985
PubMed: 35145322
DOI: 10.1038/S41594-022-00722-W
Page generated: Sat Apr 8 04:44:13 2023

Last articles

Cd in 3LE1
Cd in 3M31
Cd in 3LIZ
Cd in 3LKW
Cd in 3L3V
Cd in 3KLS
Cd in 3L6P
Cd in 3KXD
Cd in 3KM9
Cd in 3IP1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy