Atomistry » Zinc » PDB 7ui4-7uu4 » 7uu4
Atomistry »
  Zinc »
    PDB 7ui4-7uu4 »
      7uu4 »

Zinc in PDB 7uu4: Crystal Structure of APOBEC3G Complex with Ssrna

Protein crystallography data

The structure of Crystal Structure of APOBEC3G Complex with Ssrna, PDB code: 7uu4 was solved by H.J.Yang, S.-X.Li, X.J.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.36 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.225, 67.976, 126.768, 90, 90, 90
R / Rfree (%) 18.4 / 20.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of APOBEC3G Complex with Ssrna (pdb code 7uu4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of APOBEC3G Complex with Ssrna, PDB code: 7uu4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7uu4

Go back to Zinc Binding Sites List in 7uu4
Zinc binding site 1 out of 2 in the Crystal Structure of APOBEC3G Complex with Ssrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of APOBEC3G Complex with Ssrna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:37.7
occ:1.00
O A:HOH533 2.0 35.7 1.0
ND1 A:HIS65 2.0 49.6 1.0
SG A:CYS97 2.3 37.8 1.0
SG A:CYS100 2.3 36.6 1.0
CE1 A:HIS65 3.0 49.3 1.0
CG A:HIS65 3.1 47.5 1.0
CB A:CYS100 3.1 34.5 1.0
CB A:CYS97 3.3 35.8 1.0
CB A:HIS65 3.4 41.0 1.0
N A:CYS97 3.7 33.5 1.0
OE2 A:GLU67 4.0 37.3 1.0
N A:CYS100 4.1 35.4 1.0
CA A:CYS97 4.1 34.7 1.0
OE1 A:GLU67 4.1 35.5 1.0
NE2 A:HIS65 4.1 49.3 1.0
CD2 A:HIS65 4.2 49.2 1.0
CA A:CYS100 4.2 35.5 1.0
CD A:GLU67 4.3 36.4 1.0
O A:HOH549 4.5 35.4 1.0
CB A:ALA62 4.6 50.5 1.0
O A:ALA62 4.6 47.7 1.0
C A:CYS97 4.6 34.3 1.0
O A:CYS97 4.7 32.8 1.0
C A:PRO96 4.9 34.0 1.0
CA A:HIS65 5.0 37.5 1.0

Zinc binding site 2 out of 2 in 7uu4

Go back to Zinc Binding Sites List in 7uu4
Zinc binding site 2 out of 2 in the Crystal Structure of APOBEC3G Complex with Ssrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of APOBEC3G Complex with Ssrna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:41.3
occ:1.00
ND1 A:HIS257 2.1 53.0 1.0
O4 A:SO4403 2.1 42.0 1.0
SG A:CYS287 2.3 38.1 1.0
SG A:CYS290 2.4 36.4 1.0
CE1 A:HIS257 3.0 51.6 1.0
CG A:HIS257 3.1 48.4 1.0
CB A:CYS287 3.2 37.2 1.0
S A:SO4403 3.3 41.6 1.0
CB A:CYS290 3.4 36.8 1.0
O1 A:SO4403 3.4 39.6 1.0
CB A:HIS257 3.5 41.2 1.0
N A:CYS287 3.6 39.1 1.0
O A:HOH574 3.8 27.7 1.0
O A:HOH699 3.9 37.0 1.0
CA A:CYS287 3.9 39.5 1.0
O2 A:SO4403 4.0 39.7 1.0
NE2 A:HIS257 4.1 50.5 1.0
N A:CYS290 4.2 40.5 1.0
CD2 A:HIS257 4.2 49.9 1.0
O3 A:SO4403 4.3 41.4 1.0
O A:HOH640 4.4 48.4 1.0
CA A:CYS290 4.4 39.1 1.0
C A:CYS287 4.5 43.0 1.0
O A:CYS287 4.7 43.4 1.0
C A:PRO286 4.7 39.9 1.0
O A:HOH613 4.8 49.0 1.0
O A:HOH635 4.9 34.3 1.0
CA A:PRO286 4.9 38.5 1.0
CA A:HIS257 5.0 32.6 1.0

Reference:

H.Yang, K.Kim, S.Li, J.Pacheco, X.S.Chen. Structural Basis of Sequence-Specific Rna Recognition By the Antiviral Factor APOBEC3G. Nat Commun V. 13 7498 2022.
ISSN: ESSN 2041-1723
PubMed: 36470880
DOI: 10.1038/S41467-022-35201-9
Page generated: Wed Oct 30 12:22:47 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy