Zinc in PDB 7um0: Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em

Enzymatic activity of Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em

All present enzymatic activity of Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em:
2.7.7.6;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em (pdb code 7um0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em, PDB code: 7um0:

Zinc binding site 1 out of 1 in 7um0

Go back to Zinc Binding Sites List in 7um0
Zinc binding site 1 out of 1 in the Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Phage AR9 Non-Virion Rna Polymerase Holoenzyme in Complex with Two Dna Oligonucleotides Containing the AR9 P077 Promoter As Determined By Cryo-Em within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn801

b:108.0
occ:1.00
 SG D:CYS360 2.4 67.3 1.0
SG D:CYS294 2.5 98.0 1.0
SG D:CYS350 2.5 89.2 1.0
CB D:CYS294 2.9 98.0 1.0
SG D:CYS357 3.3 78.1 1.0
N D:ALA351 3.6 84.0 1.0
CB D:CYS350 3.7 89.2 1.0
CA D:CYS350 3.7 89.2 1.0
CB D:CYS360 3.7 67.3 1.0
CA D:CYS294 4.1 98.0 1.0
OG D:SER296 4.1 96.6 1.0
N D:CYS294 4.2 98.0 1.0
C D:CYS350 4.2 89.2 1.0
CB D:CYS357 4.3 78.1 1.0
N D:CYS357 4.5 78.1 1.0
CA D:ALA351 4.7 84.0 1.0
CB D:ALA351 4.8 84.0 1.0
N D:SER352 4.8 86.2 1.0
N D:CYS350 4.9 89.2 1.0
CA D:CYS360 4.9 67.3 1.0

Reference:

A.Fraser, M.L.Sokolova, A.V.Drobysheva, J.V.Gordeeva, S.Borukhov, J.Jumper, K.V.Severinov, P.G.Leiman. Structural Basis of Template Strand Deoxyuridine Promoter Recognition By A Viral Rna Polymerase. Nat Commun V. 13 3526 2022.
ISSN: ESSN 2041-1723
PubMed: 35725571
DOI: 10.1038/S41467-022-31214-6
Page generated: Wed Oct 30 12:12:55 2024

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