Zinc in PDB 7uhq: Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot)

Enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot)

All present enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot):
3.5.2.6;

Protein crystallography data

The structure of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot), PDB code: 7uhq was solved by M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.65 / 2.20
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.853, 105.853, 99.1, 90, 90, 120
R / Rfree (%) 23.3 / 26.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot) (pdb code 7uhq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot), PDB code: 7uhq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7uhq

Go back to Zinc Binding Sites List in 7uhq
Zinc binding site 1 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:28.0
occ:0.61
O10 A:XQP303 2.1 28.6 0.8
ND1 A:HIS107 2.3 15.4 1.0
NE2 A:HIS105 2.3 13.0 1.0
NE2 A:HIS181 2.5 20.2 1.0
CD2 A:HIS181 3.1 19.9 1.0
CG A:HIS107 3.2 15.6 1.0
CD2 A:HIS105 3.3 12.8 1.0
CE1 A:HIS105 3.3 12.8 1.0
CB A:HIS107 3.3 15.9 1.0
CE1 A:HIS107 3.3 15.6 1.0
C1 A:XQP303 3.3 28.7 0.8
ZN A:ZN302 3.4 14.2 0.7
CE1 A:HIS181 3.6 20.3 1.0
O8 A:XQP303 3.6 28.1 0.8
OD1 A:ASP109 3.7 20.4 1.0
O3 A:XQP303 3.8 28.1 0.8
N1 A:XQP303 3.8 28.2 0.8
CD2 A:HIS110 3.8 16.4 1.0
NE2 A:HIS110 3.9 16.7 1.0
C7 A:XQP303 4.0 28.4 0.8
C6 A:XQP303 4.1 28.6 0.8
O1 A:XQP303 4.3 28.9 0.8
C20 A:XQP303 4.3 28.2 0.8
CD2 A:HIS107 4.3 15.7 1.0
ND1 A:HIS105 4.4 12.6 1.0
CG A:HIS181 4.4 19.7 1.0
CG A:HIS105 4.4 12.8 1.0
NE2 A:HIS107 4.4 15.6 1.0
C2 A:XQP303 4.5 28.4 0.8
OD2 A:ASP109 4.5 20.3 1.0
ND1 A:HIS181 4.6 20.1 1.0
CG A:ASP109 4.6 20.1 1.0
C5 A:XQP303 4.6 28.8 0.8
CA A:HIS107 4.8 16.2 1.0

Zinc binding site 2 out of 2 in 7uhq

Go back to Zinc Binding Sites List in 7uhq
Zinc binding site 2 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:14.2
occ:0.66
OD2 A:ASP109 2.1 20.3 1.0
NE2 A:HIS110 2.2 16.7 1.0
N1 A:XQP303 2.2 28.2 0.8
O8 A:XQP303 2.3 28.1 0.8
NE2 A:HIS246 2.3 23.4 1.0
C2 A:XQP303 3.0 28.4 0.8
CG A:ASP109 3.0 20.1 1.0
C20 A:XQP303 3.1 28.2 0.8
CE1 A:HIS110 3.1 16.8 1.0
CD2 A:HIS110 3.2 16.4 1.0
C5 A:XQP303 3.2 28.8 0.8
CE1 A:HIS246 3.3 23.7 1.0
OD1 A:ASP109 3.3 20.4 1.0
CD2 A:HIS246 3.3 23.8 1.0
ZN A:ZN301 3.4 28.0 0.6
O10 A:XQP303 3.6 28.6 0.8
O3 A:XQP303 3.8 28.1 0.8
C6 A:XQP303 4.0 28.6 0.8
C1 A:XQP303 4.2 28.7 0.8
ND1 A:HIS110 4.2 16.4 1.0
O9 A:XQP303 4.3 28.1 0.8
C3 A:XQP303 4.3 28.8 0.8
NE2 A:HIS105 4.3 13.0 1.0
CG A:HIS110 4.3 16.3 1.0
CE1 A:HIS105 4.4 12.8 1.0
ND1 A:HIS246 4.4 23.8 1.0
O2 A:XQP303 4.4 29.3 0.8
CB A:ASP109 4.4 19.5 1.0
CG A:HIS246 4.5 23.8 1.0
NE2 A:HIS181 4.8 20.2 1.0
CH2 A:TRP38 4.8 32.7 1.0
C4 A:XQP303 4.9 29.2 0.8
OG A:SER206 4.9 24.7 1.0
C7 A:XQP303 5.0 28.4 0.8

Reference:

M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (4000 Ms Snapshot) To Be Published.
Page generated: Sat Apr 8 04:17:12 2023

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