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Zinc in PDB 7uhi: Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot)

Enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot)

All present enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot):
3.5.2.6;

Protein crystallography data

The structure of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot), PDB code: 7uhi was solved by M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.03 / 2.20
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.853, 105.853, 99.1, 90, 90, 120
R / Rfree (%) 23.1 / 26.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot) (pdb code 7uhi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot), PDB code: 7uhi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7uhi

Go back to Zinc Binding Sites List in 7uhi
Zinc binding site 1 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:12.8
occ:0.49
ND1 A:HIS107 2.2 10.0 1.0
NE2 A:HIS181 2.3 13.3 1.0
O1 A:MX0303 2.5 18.2 0.8
NE2 A:HIS105 2.7 11.2 1.0
C1 A:MX0303 2.9 17.9 0.8
CE1 A:HIS107 3.1 6.3 1.0
ZN A:ZN302 3.2 18.2 0.8
O8 A:MX0303 3.2 13.9 0.8
CD2 A:HIS181 3.2 11.6 1.0
CG A:HIS107 3.2 7.0 1.0
CE1 A:HIS181 3.4 11.8 1.0
N1 A:MX0303 3.4 15.1 0.8
CD2 A:HIS105 3.5 9.3 1.0
CB A:HIS107 3.6 10.0 1.0
CE1 A:HIS105 3.6 10.9 1.0
C7 A:MX0303 3.7 14.1 0.8
O3 A:MX0303 3.7 17.8 0.8
C6 A:MX0303 3.9 21.2 0.8
OD1 A:ASP109 3.9 16.2 1.0
NE2 A:HIS110 4.1 11.1 1.0
C13 A:MX0303 4.1 14.5 0.8
CD2 A:HIS110 4.1 13.8 1.0
C2 A:MX0303 4.2 16.8 0.8
NE2 A:HIS107 4.2 7.5 1.0
C5 A:MX0303 4.3 17.8 0.8
CD2 A:HIS107 4.3 8.5 1.0
CG A:HIS181 4.4 10.2 1.0
ND1 A:HIS181 4.5 9.8 1.0
CG A:HIS105 4.7 9.7 1.0
ND1 A:HIS105 4.7 11.5 1.0
OD2 A:ASP109 4.8 12.0 1.0
CG A:ASP109 4.8 16.9 1.0

Zinc binding site 2 out of 2 in 7uhi

Go back to Zinc Binding Sites List in 7uhi
Zinc binding site 2 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:18.2
occ:0.77
OD2 A:ASP109 2.3 12.0 1.0
NE2 A:HIS110 2.3 11.1 1.0
NE2 A:HIS246 2.5 14.4 1.0
O8 A:MX0303 2.6 13.9 0.8
N1 A:MX0303 2.7 15.1 0.8
C5 A:MX0303 2.9 17.8 0.8
CG A:ASP109 3.0 16.9 1.0
OD1 A:ASP109 3.1 16.2 1.0
C2 A:MX0303 3.1 16.8 0.8
CE1 A:HIS110 3.1 15.2 1.0
C13 A:MX0303 3.2 14.5 0.8
ZN A:ZN301 3.2 12.8 0.5
CD2 A:HIS110 3.3 13.8 1.0
CE1 A:HIS246 3.4 18.1 1.0
C1 A:MX0303 3.4 17.9 0.8
CD2 A:HIS246 3.5 17.1 1.0
C6 A:MX0303 3.8 21.2 0.8
O3 A:MX0303 3.9 17.8 0.8
O2 A:MX0303 4.0 25.5 0.8
O1 A:MX0303 4.1 18.2 0.8
C3 A:MX0303 4.2 18.4 0.8
O7 A:MX0303 4.2 14.6 0.8
NE2 A:HIS105 4.2 11.2 1.0
ND1 A:HIS110 4.3 14.1 1.0
CG A:HIS110 4.4 14.3 1.0
CE1 A:HIS105 4.5 10.9 1.0
CB A:ASP109 4.5 10.3 1.0
ND1 A:HIS246 4.5 10.1 1.0
NE2 A:HIS181 4.6 13.3 1.0
CG A:HIS246 4.6 12.9 1.0
C4 A:MX0303 4.7 22.7 0.8
OG A:SER206 4.8 17.3 1.0
C7 A:MX0303 4.9 14.1 0.8
CH2 A:TRP38 4.9 18.4 1.0

Reference:

M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (40 Ms Snapshot) To Be Published.
Page generated: Sat Apr 8 04:14:47 2023

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