Zinc in PDB 7uft: Cryo-Em Structure of BL_MAN38C at 2.9 A

The binding sites of Zinc atom in the Cryo-Em Structure of BL_MAN38C at 2.9 A (pdb code 7uft). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of BL_MAN38C at 2.9 A, PDB code: 7uft:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of BL_MAN38C at 2.9 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of BL_MAN38C at 2.9 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:103.0 occ:1.00 OD2 A:ASP384 1.9 84.6 1.0 OD1 A:ASP274 1.9 83.3 1.0 NE2 A:HIS272 2.1 80.1 1.0 NE2 A:HIS594 2.1 80.4 1.0 CG A:ASP274 2.8 83.3 1.0 CD2 A:HIS272 2.9 80.1 1.0 OD2 A:ASP274 2.9 83.3 1.0 CE1 A:HIS594 2.9 80.4 1.0 CG A:ASP384 3.0 84.6 1.0 CE1 A:HIS272 3.2 80.1 1.0 CD2 A:HIS594 3.2 80.4 1.0 CB A:ASP384 3.5 84.6 1.0 CG A:HIS272 4.1 80.1 1.0 OD1 A:ASP384 4.1 84.6 1.0 ND1 A:HIS594 4.1 80.4 1.0 CB A:ASP274 4.2 83.3 1.0 OD2 A:ASP595 4.2 84.9 1.0 ND1 A:HIS272 4.2 80.1 1.0 CG A:HIS594 4.3 80.4 1.0 OH A:TYR442 4.3 84.0 1.0 OD1 A:ASP595 4.5 84.9 1.0 OD2 A:ASP475 4.6 89.5 1.0 CA A:ASP274 4.7 83.3 1.0 CG A:ASP595 4.8 84.9 1.0 CE1 A:PHE593 5.0 79.3 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of BL_MAN38C at 2.9 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of BL_MAN38C at 2.9 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:102.9 occ:1.00 OD1 B:ASP274 1.9 83.5 1.0 OD2 B:ASP384 1.9 84.7 1.0 NE2 B:HIS272 2.1 80.2 1.0 NE2 B:HIS594 2.1 80.6 1.0 CG B:ASP274 2.8 83.5 1.0 CD2 B:HIS272 2.9 80.2 1.0 OD2 B:ASP274 2.9 83.5 1.0 CE1 B:HIS594 2.9 80.6 1.0 CG B:ASP384 3.0 84.7 1.0 CE1 B:HIS272 3.2 80.2 1.0 CD2 B:HIS594 3.2 80.6 1.0 CB B:ASP384 3.5 84.7 1.0 CG B:HIS272 4.1 80.2 1.0 OD1 B:ASP384 4.1 84.7 1.0 ND1 B:HIS594 4.1 80.6 1.0 CB B:ASP274 4.2 83.5 1.0 OD2 B:ASP595 4.2 85.4 1.0 ND1 B:HIS272 4.2 80.2 1.0 CG B:HIS594 4.3 80.6 1.0 OH B:TYR442 4.3 84.2 1.0 OD1 B:ASP595 4.5 85.4 1.0 OD2 B:ASP475 4.6 89.8 1.0 CA B:ASP274 4.7 83.5 1.0 CG B:ASP595 4.8 85.4 1.0 CE1 B:PHE593 5.0 79.7 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of BL_MAN38C at 2.9 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of BL_MAN38C at 2.9 A within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1101 b:102.9 occ:1.00 OD1 C:ASP274 1.9 83.4 1.0 OD2 C:ASP384 1.9 84.7 1.0 NE2 C:HIS272 2.1 80.1 1.0 NE2 C:HIS594 2.1 80.7 1.0 CG C:ASP274 2.8 83.4 1.0 CD2 C:HIS272 2.9 80.1 1.0 OD2 C:ASP274 2.9 83.4 1.0 CE1 C:HIS594 2.9 80.7 1.0 CG C:ASP384 3.0 84.7 1.0 CE1 C:HIS272 3.2 80.1 1.0 CD2 C:HIS594 3.2 80.7 1.0 CB C:ASP384 3.5 84.7 1.0 CG C:HIS272 4.1 80.1 1.0 OD1 C:ASP384 4.1 84.7 1.0 ND1 C:HIS594 4.1 80.7 1.0 CB C:ASP274 4.2 83.4 1.0 OD2 C:ASP595 4.2 85.5 1.0 ND1 C:HIS272 4.2 80.1 1.0 CG C:HIS594 4.3 80.7 1.0 OH C:TYR442 4.3 84.2 1.0 OD1 C:ASP595 4.5 85.5 1.0 OD2 C:ASP475 4.6 89.8 1.0 CA C:ASP274 4.7 83.4 1.0 CG C:ASP595 4.8 85.5 1.0 CE1 C:PHE593 5.0 79.8 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of BL_MAN38C at 2.9 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of BL_MAN38C at 2.9 A within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1101 b:102.7 occ:1.00 OD1 D:ASP274 1.9 83.2 1.0 OD2 D:ASP384 1.9 84.5 1.0 NE2 D:HIS272 2.1 80.0 1.0 NE2 D:HIS594 2.1 80.4 1.0 CG D:ASP274 2.8 83.2 1.0 CD2 D:HIS272 2.9 80.0 1.0 OD2 D:ASP274 2.9 83.2 1.0 CE1 D:HIS594 2.9 80.4 1.0 CG D:ASP384 3.0 84.5 1.0 CE1 D:HIS272 3.2 80.0 1.0 CD2 D:HIS594 3.2 80.4 1.0 CB D:ASP384 3.5 84.5 1.0 CG D:HIS272 4.1 80.0 1.0 OD1 D:ASP384 4.1 84.5 1.0 ND1 D:HIS594 4.1 80.4 1.0 CB D:ASP274 4.2 83.2 1.0 OD2 D:ASP595 4.2 85.0 1.0 ND1 D:HIS272 4.2 80.0 1.0 CG D:HIS594 4.3 80.4 1.0 OH D:TYR442 4.3 84.1 1.0 OD1 D:ASP595 4.5 85.0 1.0 OD2 D:ASP475 4.6 89.9 1.0 CA D:ASP274 4.7 83.2 1.0 CG D:ASP595 4.8 85.0 1.0 CE1 D:PHE593 5.0 79.3 1.0

C.R.Santos, R.L.Cordeiro, M.N.Domingues, A.C.Borges, M.A.De Farias, M.Van Heel, M.T.Murakami, R.V.Portugal. Cryo-Em Structure of BL_MAN38C at 2.9 A Nat.Chem.Biol. 2022.
ISSN: ESSN 1552-4469