Zinc in PDB 7ufs: Cryo-Em Structure of BL_MAN38B at 3.4 A

The binding sites of Zinc atom in the Cryo-Em Structure of BL_MAN38B at 3.4 A (pdb code 7ufs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of BL_MAN38B at 3.4 A, PDB code: 7ufs:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of BL_MAN38B at 3.4 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of BL_MAN38B at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:117.7 occ:1.00 NE2 A:HIS276 2.1 95.8 1.0 OD2 A:ASP278 2.1 102.1 1.0 NE2 A:HIS598 2.1 98.8 1.0 OD2 A:ASP388 2.1 97.2 1.0 CD2 A:HIS276 3.0 95.8 1.0 CE1 A:HIS598 3.0 98.8 1.0 CE1 A:HIS276 3.1 95.8 1.0 CG A:ASP278 3.1 102.1 1.0 CD2 A:HIS598 3.1 98.8 1.0 CG A:ASP388 3.2 97.2 1.0 OD1 A:ASP278 3.6 102.1 1.0 CB A:ASP388 3.7 97.2 1.0 OD2 A:ASP599 3.9 103.0 1.0 ND1 A:HIS276 4.2 95.8 1.0 ND1 A:HIS598 4.2 98.8 1.0 CG A:HIS276 4.2 95.8 1.0 CG A:HIS598 4.3 98.8 1.0 CB A:ASP278 4.3 102.1 1.0 OD1 A:ASP388 4.3 97.2 1.0 OH A:TYR446 4.8 88.0 1.0 CA A:ASP278 4.8 102.1 1.0 CG A:ASP599 4.9 103.0 1.0 O A:ASP388 4.9 97.2 1.0 CE2 A:PHE597 5.0 97.0 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of BL_MAN38B at 3.4 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of BL_MAN38B at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:118.3 occ:1.00 OD2 B:ASP278 2.0 102.1 1.0 NE2 B:HIS598 2.1 98.9 1.0 NE2 B:HIS276 2.1 95.1 1.0 OD2 B:ASP388 2.1 97.7 1.0 CG B:ASP278 2.9 102.1 1.0 CE1 B:HIS598 3.0 98.9 1.0 CE1 B:HIS276 3.1 95.1 1.0 CD2 B:HIS276 3.1 95.1 1.0 CD2 B:HIS598 3.1 98.9 1.0 CG B:ASP388 3.2 97.7 1.0 OD1 B:ASP278 3.3 102.1 1.0 CB B:ASP388 3.7 97.7 1.0 OD2 B:ASP599 3.9 103.3 1.0 ND1 B:HIS598 4.2 98.9 1.0 CB B:ASP278 4.2 102.1 1.0 ND1 B:HIS276 4.2 95.1 1.0 CG B:HIS276 4.3 95.1 1.0 CG B:HIS598 4.3 98.9 1.0 OD1 B:ASP388 4.3 97.7 1.0 OH B:TYR446 4.8 88.0 1.0 CA B:ASP278 4.8 102.1 1.0 CG B:ASP599 4.9 103.3 1.0 O B:ASP388 4.9 97.7 1.0 CE2 B:PHE597 5.0 97.1 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of BL_MAN38B at 3.4 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of BL_MAN38B at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1101 b:117.4 occ:1.00 OD2 C:ASP278 2.0 102.3 1.0 NE2 C:HIS598 2.1 98.6 1.0 NE2 C:HIS276 2.1 95.6 1.0 OD2 C:ASP388 2.1 96.7 1.0 CG C:ASP278 2.9 102.3 1.0 CE1 C:HIS598 3.0 98.6 1.0 CE1 C:HIS276 3.1 95.6 1.0 CD2 C:HIS276 3.1 95.6 1.0 CD2 C:HIS598 3.1 98.6 1.0 CG C:ASP388 3.2 96.7 1.0 OD1 C:ASP278 3.3 102.3 1.0 CB C:ASP388 3.7 96.7 1.0 OD2 C:ASP599 3.9 103.1 1.0 ND1 C:HIS598 4.2 98.6 1.0 CB C:ASP278 4.2 102.3 1.0 ND1 C:HIS276 4.2 95.6 1.0 CG C:HIS276 4.3 95.6 1.0 CG C:HIS598 4.3 98.6 1.0 OD1 C:ASP388 4.3 96.7 1.0 OH C:TYR446 4.8 88.1 1.0 CA C:ASP278 4.8 102.3 1.0 CG C:ASP599 4.9 103.1 1.0 O C:ASP388 4.9 96.7 1.0 CE2 C:PHE597 5.0 97.1 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of BL_MAN38B at 3.4 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of BL_MAN38B at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1101 b:118.4 occ:1.00 OD2 D:ASP278 2.1 102.2 1.0 NE2 D:HIS598 2.1 98.9 1.0 NE2 D:HIS276 2.1 95.0 1.0 OD2 D:ASP388 2.1 96.7 1.0 CG D:ASP278 2.9 102.2 1.0 CE1 D:HIS598 3.0 98.9 1.0 CE1 D:HIS276 3.1 95.0 1.0 CD2 D:HIS276 3.1 95.0 1.0 CD2 D:HIS598 3.1 98.9 1.0 CG D:ASP388 3.2 96.7 1.0 OD1 D:ASP278 3.2 102.2 1.0 CB D:ASP388 3.7 96.7 1.0 OD2 D:ASP599 3.9 103.3 1.0 ND1 D:HIS598 4.2 98.9 1.0 CB D:ASP278 4.2 102.2 1.0 ND1 D:HIS276 4.2 95.0 1.0 CG D:HIS276 4.3 95.0 1.0 CG D:HIS598 4.3 98.9 1.0 OD1 D:ASP388 4.3 96.7 1.0 OH D:TYR446 4.8 87.5 1.0 CA D:ASP278 4.8 102.2 1.0 CG D:ASP599 4.9 103.3 1.0 O D:ASP388 4.9 96.7 1.0 CE2 D:PHE597 5.0 97.1 1.0

C.R.Santos, R.L.Cordeiro, M.N.Domingues, A.C.Borges, M.A.De Farias, M.Van Heel, M.T.Murakami, R.V.Portugal. Cryo-Em Structure of BL_MAN38B at 3.4 A Nat.Chem.Biol. 2022.
ISSN: ESSN 1552-4469