Zinc in PDB 7uee: Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K

Enzymatic activity of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K

All present enzymatic activity of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K:
1.1.1.1;

Protein crystallography data

The structure of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K, PDB code: 7uee was solved by B.V.Plapp, L.Gakhar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.82 / 1.20
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.4, 51.23, 92.43, 91.72, 103.11, 110.21
R / Rfree (%) 12.2 / 14.4

Other elements in 7uee:

The structure of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K also contains other interesting chemical elements:

Fluorine (F) 10 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K (pdb code 7uee). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K, PDB code: 7uee:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7uee

Go back to Zinc Binding Sites List in 7uee
Zinc binding site 1 out of 4 in the Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:10.9
occ:1.00
 O1 A:PFB404 1.9 11.3 1.0
NE2 A:HIS67 2.0 10.3 1.0
SG A:CYS174 2.3 10.5 1.0
SG A:CYS46 2.3 10.8 1.0
C7 A:PFB404 2.9 10.0 1.0
CE1 A:HIS67 3.0 9.1 1.0
CD2 A:HIS67 3.1 10.4 1.0
CB A:CYS46 3.3 9.9 1.0
C5N A:NAJ403 3.3 8.7 1.0
CB A:CYS174 3.4 9.5 1.0
OG A:SER48 3.8 10.6 1.0
C6N A:NAJ403 3.9 8.8 1.0
C4N A:NAJ403 3.9 9.8 1.0
CB A:SER48 4.0 9.9 1.0
F6 A:PFB404 4.1 11.8 1.0
C1 A:PFB404 4.2 10.5 1.0
ND1 A:HIS67 4.2 9.6 1.0
CG A:HIS67 4.2 9.6 1.0
C6 A:PFB404 4.6 11.6 1.0
NH2 A:ARG369 4.6 10.9 1.0
CA A:CYS174 4.8 9.0 1.0
CA A:CYS46 4.8 10.2 1.0
N A:SER48 4.8 9.8 1.0
CE2 A:PHE93 4.8 10.8 1.0
OE2 A:GLU68 4.9 11.6 1.0
N1N A:NAJ403 4.9 8.8 1.0
C3N A:NAJ403 5.0 9.5 1.0

Zinc binding site 2 out of 4 in 7uee

Go back to Zinc Binding Sites List in 7uee
Zinc binding site 2 out of 4 in the Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:11.7
occ:1.00
 SG A:CYS111 2.3 11.5 1.0
SG A:CYS97 2.3 13.2 1.0
SG A:CYS100 2.3 12.2 1.0
SG A:CYS103 2.4 11.4 1.0
CB A:CYS111 3.3 9.9 1.0
CB A:CYS100 3.4 12.8 1.0
CB A:CYS97 3.4 12.8 1.0
CB A:CYS103 3.4 11.3 1.0
N A:CYS97 3.5 11.8 1.0
CA A:CYS111 3.7 10.2 1.0
N A:CYS100 3.9 13.7 1.0
CA A:CYS97 3.9 12.1 1.0
N A:GLY98 4.0 12.6 1.0
N A:LEU112 4.0 11.2 1.0
CA A:CYS100 4.2 14.4 1.0
N A:CYS103 4.2 10.9 1.0
C A:CYS111 4.3 11.1 1.0
C A:CYS97 4.3 13.1 1.0
CA A:CYS103 4.4 11.1 1.0
N A:LYS99 4.4 14.4 1.0
C A:GLN96 4.6 11.7 1.0
C A:CYS100 4.9 12.9 1.0
N A:LYS113 4.9 11.2 1.0
CG A:LYS113 4.9 16.2 1.0
O A:CYS100 4.9 12.3 1.0
O A:HOH866 4.9 28.2 1.0
CA A:GLN96 4.9 11.6 1.0
CA A:GLY98 5.0 14.9 1.0

Zinc binding site 3 out of 4 in 7uee

Go back to Zinc Binding Sites List in 7uee
Zinc binding site 3 out of 4 in the Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:12.8
occ:1.00
 O1 B:PFB404 1.9 12.7 1.0
NE2 B:HIS67 2.0 12.8 1.0
SG B:CYS46 2.3 13.1 1.0
SG B:CYS174 2.3 12.4 1.0
C7 B:PFB404 2.9 12.1 1.0
CE1 B:HIS67 3.0 12.0 1.0
CD2 B:HIS67 3.1 11.9 1.0
CB B:CYS46 3.3 11.8 1.0
C5N B:NAJ403 3.4 11.2 1.0
CB B:CYS174 3.4 10.9 1.0
OG B:SER48 3.8 12.1 1.0
C6N B:NAJ403 3.9 11.1 1.0
C4N B:NAJ403 3.9 11.4 1.0
CB B:SER48 4.0 11.8 1.0
F6 B:PFB404 4.0 14.0 1.0
C1 B:PFB404 4.2 14.1 1.0
ND1 B:HIS67 4.2 11.8 1.0
CG B:HIS67 4.2 11.5 1.0
NH2 B:ARG369 4.6 13.3 1.0
C6 B:PFB404 4.6 13.4 1.0
CA B:CYS46 4.7 11.5 1.0
CA B:CYS174 4.8 11.4 1.0
N B:SER48 4.8 12.1 1.0
CE2 B:PHE93 4.9 11.5 1.0
OE2 B:GLU68 4.9 13.3 1.0
N1N B:NAJ403 4.9 10.5 1.0
CA B:SER48 5.0 11.7 1.0

Zinc binding site 4 out of 4 in 7uee

Go back to Zinc Binding Sites List in 7uee
Zinc binding site 4 out of 4 in the Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Horse Liver Alcohol Dehydrogenase with Nad and Pentafluorobenzyl Alcohol at 75 K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:14.3
occ:1.00
 SG B:CYS100 2.3 15.1 1.0
SG B:CYS111 2.3 14.1 1.0
SG B:CYS97 2.4 16.8 1.0
SG B:CYS103 2.4 13.4 1.0
CB B:CYS111 3.3 12.5 1.0
CB B:CYS100 3.4 17.8 1.0
CB B:CYS97 3.4 15.8 1.0
CB B:CYS103 3.4 14.1 1.0
N B:CYS97 3.5 14.8 1.0
CA B:CYS111 3.7 12.5 1.0
N B:CYS100 3.9 17.1 1.0
CA B:CYS97 3.9 16.1 1.0
N B:LEU112 4.0 13.7 1.0
N B:GLY98 4.0 16.3 1.0
CA B:CYS100 4.2 17.1 1.0
N B:CYS103 4.2 13.5 1.0
C B:CYS111 4.3 13.5 1.0
C B:CYS97 4.3 17.8 1.0
CA B:CYS103 4.4 13.3 1.0
N B:LYS99 4.5 18.3 1.0
C B:GLN96 4.6 13.9 1.0
N B:LYS113 4.8 14.0 1.0
C B:CYS100 4.9 16.4 1.0
CG B:LYS113 4.9 18.3 1.0
CA B:GLN96 4.9 13.1 1.0
O B:CYS100 4.9 15.6 1.0
O B:HOH814 5.0 33.0 1.0

Reference:

B.V.Plapp, L.Gakhar, R.Subramanian. Dependence of Crystallographic Atomic Displacement Factors on Temperature (25-150 K) For Complexes of Horse Liver Alcohol Dehydrogenases Acta Crystallogr.,Sect.D V. D78 1221 2022.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798322008361
Page generated: Wed Oct 30 12:04:07 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy