Atomistry » Zinc » PDB 7t0d-7tny » 7t28
Atomistry »
  Zinc »
    PDB 7t0d-7tny »
      7t28 »

Zinc in PDB 7t28: Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State

Protein crystallography data

The structure of Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State, PDB code: 7t28 was solved by S.J.Hobbs, T.Wein, A.Lu, B.R.Morehouse, J.Schnabel, R.Sorek, P.J.Kranzusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.26 / 2.68
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.485, 82.485, 76.098, 90, 90, 120
R / Rfree (%) 30 / 32

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State (pdb code 7t28). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State, PDB code: 7t28:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7t28

Go back to Zinc Binding Sites List in 7t28
Zinc binding site 1 out of 2 in the Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:141.3
occ:1.00
CE1 A:HIS65 1.8 111.8 1.0
NE2 A:HIS156 2.3 117.4 1.0
NE2 A:HIS65 2.3 115.0 1.0
O A:HOH431 2.4 50.0 1.0
CD2 A:HIS156 2.6 99.7 1.0
ND1 A:HIS65 3.0 88.3 1.0
CE1 A:HIS156 3.3 116.6 1.0
CD2 A:HIS65 3.6 106.7 1.0
CG A:HIS156 3.7 100.1 1.0
ZN A:ZN302 3.9 93.8 1.0
CG A:HIS65 3.9 97.3 1.0
CE1 A:HIS209 4.0 104.5 1.0
ND1 A:HIS156 4.0 97.3 1.0
O A:HOH411 4.0 50.0 1.0
CE1 A:HIS231 4.0 108.0 1.0
NE2 A:HIS231 4.6 119.5 1.0
N A:THR181 4.7 79.3 1.0
CE1 A:HIS70 4.7 76.3 1.0
OD2 A:ASP69 4.8 82.6 1.0
NE2 A:HIS209 4.8 107.7 1.0
CB A:HIS156 4.9 103.0 1.0
ND1 A:HIS209 4.9 99.1 1.0
ND1 A:HIS231 4.9 107.4 1.0

Zinc binding site 2 out of 2 in 7t28

Go back to Zinc Binding Sites List in 7t28
Zinc binding site 2 out of 2 in the Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Phage BSP38 Anti-Pycsar Nuclease APYC1 in Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:93.8
occ:1.00
NE2 A:HIS70 2.3 81.2 1.0
NE2 A:HIS231 2.3 119.5 1.0
CE1 A:HIS70 2.6 76.3 1.0
CE1 A:HIS231 2.8 108.0 1.0
O A:HOH431 2.8 50.0 1.0
CD2 A:HIS231 2.9 101.2 1.0
ND1 A:HIS231 3.5 107.4 1.0
CG A:HIS231 3.5 90.0 1.0
CD2 A:HIS70 3.6 81.8 1.0
ND1 A:HIS70 3.9 71.9 1.0
ZN A:ZN301 3.9 141.3 1.0
OD2 A:ASP69 4.0 82.6 1.0
CE1 A:HIS65 4.0 111.8 1.0
ND1 A:HIS65 4.1 88.3 1.0
O A:HOH411 4.1 50.0 1.0
C A:SER179 4.3 86.0 1.0
CG A:HIS70 4.3 76.2 1.0
OG A:SER179 4.5 70.2 1.0
CB A:ASN24 4.6 74.7 1.0
CB A:HIS231 4.8 90.1 1.0
O A:ASN24 4.8 80.8 1.0
ND2 A:ASN24 5.0 78.6 1.0
O A:SER179 5.0 98.6 1.0

Reference:

S.J.Hobbs, T.Wein, A.Lu, B.R.Morehouse, J.Schnabel, A.Leavitt, E.Yirmiya, R.Sorek, P.J.Kranzusch. Phage Anti-Cbass and Anti-Pycsar Nucleases Subvert Bacterial Immunity. Nature V. 605 522 2022.
ISSN: ESSN 1476-4687
PubMed: 35395152
DOI: 10.1038/S41586-022-04716-Y
Page generated: Sat Apr 8 03:24:13 2023

Last articles

Cl in 4NHT
Cl in 4NO7
Cl in 4NML
Cl in 4NN3
Cl in 4NMW
Cl in 4NM7
Cl in 4NM5
Cl in 4NM3
Cl in 4NM0
Cl in 4NHQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy