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Zinc in PDB 7sym: Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii)

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii) (pdb code 7sym). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii), PDB code: 7sym:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7sym

Go back to Zinc Binding Sites List in 7sym
Zinc binding site 1 out of 2 in the Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii) within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Zn201

b:84.2
occ:1.00
CB b:CYS26 2.2 71.3 1.0
SG b:CYS77 2.2 70.7 1.0
SG b:CYS23 2.2 68.8 1.0
SG b:CYS26 2.2 71.3 1.0
SG b:CYS74 2.3 64.6 1.0
N b:CYS26 2.3 71.3 1.0
CA b:CYS26 2.7 71.3 1.0
CB b:CYS77 3.0 70.7 1.0
C b:ASN25 3.2 69.3 1.0
CB b:CYS23 3.5 68.8 1.0
C b:CYS26 3.6 71.3 1.0
CB b:CYS74 3.7 64.6 1.0
CB b:ASN25 3.7 69.3 1.0
CA b:ASN25 3.7 69.3 1.0
N b:ASN25 3.8 69.3 1.0
O b:ASN25 4.1 69.3 1.0
O b:CYS26 4.1 71.3 1.0
N b:CYS74 4.1 64.6 1.0
CA b:CYS77 4.3 70.7 1.0
N b:ALA27 4.5 74.8 1.0
CA b:CYS74 4.5 64.6 1.0
N b:CYS77 4.5 70.7 1.0
N b:THR24 4.6 66.8 1.0
C b:THR24 4.7 66.8 1.0
CG b:ASN25 4.8 69.3 1.0
CA b:CYS23 4.8 68.8 1.0
OD1 b:ASN25 4.8 69.3 1.0
C b:CYS23 4.9 68.8 1.0

Zinc binding site 2 out of 2 in 7sym

Go back to Zinc Binding Sites List in 7sym
Zinc binding site 2 out of 2 in the Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Hcv Ires Bound to the 40S Ribosomal Subunit, Head Opening. Structure 7(Delta Dii) within 5.0Å range:
probe atom residue distance (Å) B Occ
g:Zn200

b:319.6
occ:1.00
CB g:CYS144 1.7 300.1 1.0
SG g:CYS121 2.3 302.3 1.0
SG g:CYS126 2.3 307.7 1.0
SG g:CYS141 2.3 298.6 1.0
SG g:CYS144 2.3 300.1 1.0
CA g:CYS144 3.2 300.1 1.0
OG g:SER123 3.6 307.3 1.0
CB g:CYS141 3.7 298.6 1.0
N g:CYS144 3.7 300.1 1.0
CD1 g:LEU146 3.9 294.9 1.0
CB g:CYS126 3.9 307.7 1.0
C g:CYS144 4.0 300.1 1.0
CB g:CYS121 4.0 302.3 1.0
CB g:SER123 4.1 307.3 1.0
CG g:LEU146 4.2 294.9 1.0
N g:CYS145 4.5 290.3 1.0
O g:CYS144 4.6 300.1 1.0
N g:GLY142 4.9 295.3 1.0
O g:CYS126 5.0 307.7 1.0

Reference:

Z.P.Brown, I.S.Abaeva, S.De, C.U.T.Hellen, T.V.Pestova, J.Frank. Comprehensive Structural Overview of the Hcv Ires-Mediated Translation Initiation Pathway To Be Published.
Page generated: Sat Apr 8 03:16:38 2023

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