Zinc in PDB 7stw: Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus

Other elements in 7stw:

The structure of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus (pdb code 7stw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus, PDB code: 7stw:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 7stw

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Zinc binding site 1 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:15.2
occ:1.00
OE1 A:GLU30 2.1 5.2 1.0
ND1 A:HIS66 2.2 5.7 1.0
OD1 A:ASP63 2.3 7.4 1.0
OE2 A:GLU148 2.4 7.7 1.0
OE2 A:GLU30 2.6 5.2 1.0
CD A:GLU30 2.7 5.2 1.0
CE1 A:HIS66 3.0 5.7 1.0
O A:HOH322 3.2 6.8 1.0
CG A:ASP63 3.2 7.4 1.0
CG A:HIS66 3.3 5.7 1.0
CD A:GLU148 3.5 7.7 1.0
CB A:HIS66 3.7 5.7 1.0
CA A:ASP63 3.8 7.4 1.0
CB A:ASP63 3.8 7.4 1.0
O A:HOH326 4.0 5.3 1.0
FE A:FE202 4.0 23.3 1.0
OE1 A:GLU148 4.1 7.7 1.0
CG A:GLU30 4.1 5.2 1.0
OD2 A:ASP63 4.2 7.4 1.0
NE2 A:HIS66 4.2 5.7 1.0
CD2 A:HIS66 4.4 5.7 1.0
CG2 A:ILE144 4.6 4.7 1.0
N A:ASP63 4.6 7.4 1.0
CG A:GLU148 4.6 7.7 1.0
O A:ASP63 4.7 7.4 1.0
CB A:GLU30 4.8 5.2 1.0
C A:ASP63 4.8 7.4 1.0
O A:GLU62 5.0 8.7 1.0
OH A:TYR123 5.0 5.4 1.0

Zinc binding site 2 out of 12 in 7stw

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Zinc binding site 2 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:15.8
occ:1.00
OD1 B:ASP63 2.2 7.3 1.0
OE1 B:GLU30 2.2 4.8 1.0
OE2 B:GLU148 2.3 7.5 1.0
ND1 B:HIS66 2.3 5.5 1.0
OE2 B:GLU30 2.7 4.8 1.0
CD B:GLU30 2.8 4.8 1.0
CE1 B:HIS66 3.1 5.5 1.0
CG B:ASP63 3.1 7.3 1.0
O B:HOH315 3.1 7.8 1.0
CD B:GLU148 3.4 7.5 1.0
CG B:HIS66 3.4 5.5 1.0
CB B:ASP63 3.7 7.3 1.0
CA B:ASP63 3.8 7.3 1.0
CB B:HIS66 3.9 5.5 1.0
OE1 B:GLU148 3.9 7.5 1.0
OD2 B:ASP63 4.0 7.3 1.0
FE B:FE202 4.0 22.1 1.0
NE2 B:HIS66 4.3 5.5 1.0
CG B:GLU30 4.3 4.8 1.0
O B:HOH317 4.3 6.2 1.0
CD2 B:HIS66 4.5 5.5 1.0
N B:ASP63 4.5 7.3 1.0
CG B:GLU148 4.6 7.5 1.0
CG2 B:ILE144 4.7 4.5 1.0
O B:ASP63 4.8 7.3 1.0
C B:ASP63 4.8 7.3 1.0
CB B:GLU30 4.9 4.8 1.0
O B:GLU62 5.0 8.5 1.0

Zinc binding site 3 out of 12 in 7stw

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Zinc binding site 3 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:13.1
occ:1.00
OE2 C:GLU148 2.0 7.5 1.0
ND1 C:HIS66 2.2 5.4 1.0
OE1 C:GLU30 2.4 4.8 1.0
OD1 C:ASP63 2.5 7.1 1.0
OE2 C:GLU30 2.6 4.8 1.0
CD C:GLU30 2.8 4.8 1.0
CE1 C:HIS66 3.0 5.4 1.0
CD C:GLU148 3.2 7.5 1.0
CG C:HIS66 3.4 5.4 1.0
O C:HOH321 3.4 7.7 1.0
CG C:ASP63 3.5 7.1 1.0
OE1 C:GLU148 3.8 7.5 1.0
CB C:HIS66 3.9 5.4 1.0
FE C:FE202 4.0 23.0 1.0
CA C:ASP63 4.1 7.1 1.0
CB C:ASP63 4.1 7.1 1.0
NE2 C:HIS66 4.2 5.4 1.0
CG C:GLU148 4.3 7.5 1.0
CG C:GLU30 4.3 4.8 1.0
OD2 C:ASP63 4.4 7.1 1.0
CG2 C:ILE144 4.4 4.6 1.0
CD2 C:HIS66 4.4 5.4 1.0
CE2 C:TYR123 4.8 5.1 1.0
N C:ASP63 4.9 7.1 1.0
OH C:TYR123 4.9 5.1 1.0

Zinc binding site 4 out of 12 in 7stw

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Zinc binding site 4 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:17.3
occ:1.00
OE1 D:GLU30 2.1 4.9 1.0
OE2 D:GLU148 2.2 7.5 1.0
OD1 D:ASP63 2.4 7.5 1.0
ND1 D:HIS66 2.5 5.4 1.0
OE2 D:GLU30 2.5 4.9 1.0
CD D:GLU30 2.6 4.9 1.0
O D:HOH323 3.2 9.0 1.0
CE1 D:HIS66 3.3 5.4 1.0
CD D:GLU148 3.3 7.5 1.0
CG D:ASP63 3.3 7.5 1.0
CG D:HIS66 3.6 5.4 1.0
OE1 D:GLU148 3.9 7.5 1.0
CB D:ASP63 3.9 7.5 1.0
CB D:HIS66 4.0 5.4 1.0
CA D:ASP63 4.0 7.5 1.0
FE D:FE202 4.0 25.8 1.0
CG D:GLU30 4.1 4.9 1.0
OD2 D:ASP63 4.2 7.5 1.0
CG D:GLU148 4.5 7.5 1.0
NE2 D:HIS66 4.5 5.4 1.0
CG2 D:ILE144 4.6 4.4 1.0
CD2 D:HIS66 4.7 5.4 1.0
CB D:GLU30 4.8 4.9 1.0
N D:ASP63 4.9 7.5 1.0
CE2 D:TYR123 4.9 5.3 1.0
OH D:TYR123 4.9 5.3 1.0
O D:ASP63 5.0 7.5 1.0

Zinc binding site 5 out of 12 in 7stw

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Zinc binding site 5 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn201

b:17.4
occ:1.00
OE1 E:GLU30 2.1 5.6 1.0
ND1 E:HIS66 2.1 6.1 1.0
OE2 E:GLU148 2.4 8.3 1.0
OD1 E:ASP63 2.4 8.1 1.0
OE2 E:GLU30 2.6 5.6 1.0
CD E:GLU30 2.6 5.6 1.0
CE1 E:HIS66 3.0 6.1 1.0
O E:HOH318 3.1 7.5 1.0
CG E:HIS66 3.2 6.1 1.0
CG E:ASP63 3.3 8.1 1.0
CD E:GLU148 3.5 8.3 1.0
CB E:HIS66 3.6 6.1 1.0
CA E:ASP63 3.8 8.1 1.0
CB E:ASP63 3.8 8.1 1.0
FE E:FE202 4.0 23.5 1.0
O E:HOH319 4.1 5.7 1.0
NE2 E:HIS66 4.1 6.1 1.0
OE1 E:GLU148 4.1 8.3 1.0
CG E:GLU30 4.1 5.6 1.0
OD2 E:ASP63 4.3 8.1 1.0
CD2 E:HIS66 4.3 6.1 1.0
CG2 E:ILE144 4.5 4.8 1.0
N E:ASP63 4.6 8.1 1.0
CG E:GLU148 4.6 8.3 1.0
O E:ASP63 4.7 8.1 1.0
CB E:GLU30 4.8 5.6 1.0
C E:ASP63 4.8 8.1 1.0
O E:GLU62 4.9 9.7 1.0
OH E:TYR123 4.9 5.5 1.0

Zinc binding site 6 out of 12 in 7stw

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Zinc binding site 6 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn201

b:16.8
occ:1.00
OE1 F:GLU30 2.2 4.8 1.0
OE2 F:GLU148 2.2 7.2 1.0
OD1 F:ASP63 2.2 7.5 1.0
ND1 F:HIS66 2.3 5.6 1.0
OE2 F:GLU30 2.7 4.8 1.0
CD F:GLU30 2.8 4.8 1.0
CE1 F:HIS66 3.1 5.6 1.0
CG F:ASP63 3.2 7.5 1.0
CD F:GLU148 3.4 7.2 1.0
CG F:HIS66 3.4 5.6 1.0
O F:HOH317 3.5 7.8 1.0
CB F:ASP63 3.8 7.5 1.0
CA F:ASP63 3.8 7.5 1.0
CB F:HIS66 3.9 5.6 1.0
OE1 F:GLU148 3.9 7.2 1.0
O F:HOH318 4.0 5.7 1.0
FE F:FE202 4.0 22.5 1.0
OD2 F:ASP63 4.1 7.5 1.0
NE2 F:HIS66 4.3 5.6 1.0
CG F:GLU30 4.3 4.8 1.0
CD2 F:HIS66 4.5 5.6 1.0
CG F:GLU148 4.5 7.2 1.0
N F:ASP63 4.6 7.5 1.0
CG2 F:ILE144 4.7 4.3 1.0
O F:ASP63 4.9 7.5 1.0
C F:ASP63 4.9 7.5 1.0
CB F:GLU30 4.9 4.8 1.0

Zinc binding site 7 out of 12 in 7stw

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Zinc binding site 7 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:15.5
occ:1.00
OE2 G:GLU148 2.0 8.0 1.0
ND1 G:HIS66 2.3 5.4 1.0
OE1 G:GLU30 2.3 4.8 1.0
OE2 G:GLU30 2.5 4.8 1.0
OD1 G:ASP63 2.6 7.1 1.0
CD G:GLU30 2.8 4.8 1.0
CE1 G:HIS66 3.0 5.4 1.0
CD G:GLU148 3.2 8.0 1.0
O G:HOH321 3.2 8.2 1.0
CG G:HIS66 3.4 5.4 1.0
CG G:ASP63 3.6 7.1 1.0
OE1 G:GLU148 3.8 8.0 1.0
CB G:HIS66 3.9 5.4 1.0
FE G:FE202 4.0 25.2 1.0
CA G:ASP63 4.2 7.1 1.0
CB G:ASP63 4.2 7.1 1.0
NE2 G:HIS66 4.2 5.4 1.0
CG G:GLU148 4.3 8.0 1.0
CG G:GLU30 4.3 4.8 1.0
CG2 G:ILE144 4.3 4.5 1.0
OD2 G:ASP63 4.4 7.1 1.0
CD2 G:HIS66 4.4 5.4 1.0
CE2 G:TYR123 4.8 5.3 1.0
OH G:TYR123 4.8 5.3 1.0
N G:ASP63 5.0 7.1 1.0

Zinc binding site 8 out of 12 in 7stw

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Zinc binding site 8 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn201

b:16.4
occ:1.00
OE1 H:GLU30 2.1 5.2 1.0
OE2 H:GLU148 2.2 8.3 1.0
OD1 H:ASP63 2.5 7.6 1.0
OE2 H:GLU30 2.5 5.2 1.0
ND1 H:HIS66 2.5 5.7 1.0
CD H:GLU30 2.6 5.2 1.0
O H:HOH319 3.2 8.3 1.0
CE1 H:HIS66 3.3 5.7 1.0
CD H:GLU148 3.3 8.3 1.0
CG H:ASP63 3.3 7.6 1.0
CG H:HIS66 3.6 5.7 1.0
OE1 H:GLU148 3.9 8.3 1.0
CB H:ASP63 4.0 7.6 1.0
CB H:HIS66 4.0 5.7 1.0
FE H:FE202 4.0 27.9 1.0
CA H:ASP63 4.1 7.6 1.0
CG H:GLU30 4.1 5.2 1.0
OD2 H:ASP63 4.2 7.6 1.0
CG H:GLU148 4.5 8.3 1.0
NE2 H:HIS66 4.5 5.7 1.0
CG2 H:ILE144 4.6 4.8 1.0
CD2 H:HIS66 4.7 5.7 1.0
CB H:GLU30 4.8 5.2 1.0
CE2 H:TYR123 4.9 5.9 1.0
OH H:TYR123 4.9 5.9 1.0
N H:ASP63 4.9 7.6 1.0
O H:ASP63 5.0 7.6 1.0

Zinc binding site 9 out of 12 in 7stw

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Zinc binding site 9 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:16.3
occ:1.00
OE1 I:GLU30 2.1 5.5 1.0
ND1 I:HIS66 2.2 6.1 1.0
OE2 I:GLU148 2.3 8.4 1.0
OD1 I:ASP63 2.3 8.2 1.0
OE2 I:GLU30 2.6 5.5 1.0
CD I:GLU30 2.7 5.5 1.0
CE1 I:HIS66 3.1 6.1 1.0
O I:HOH314 3.2 8.1 1.0
CG I:ASP63 3.2 8.2 1.0
CG I:HIS66 3.3 6.1 1.0
CD I:GLU148 3.5 8.4 1.0
CB I:HIS66 3.8 6.1 1.0
CB I:ASP63 3.8 8.2 1.0
CA I:ASP63 3.8 8.2 1.0
O I:HOH319 3.9 6.0 1.0
OE1 I:GLU148 4.0 8.4 1.0
FE I:FE202 4.0 22.8 1.0
OD2 I:ASP63 4.2 8.2 1.0
CG I:GLU30 4.2 5.5 1.0
NE2 I:HIS66 4.2 6.1 1.0
CD2 I:HIS66 4.4 6.1 1.0
CG I:GLU148 4.6 8.4 1.0
CG2 I:ILE144 4.6 5.5 1.0
N I:ASP63 4.6 8.2 1.0
O I:ASP63 4.8 8.2 1.0
CB I:GLU30 4.8 5.5 1.0
C I:ASP63 4.9 8.2 1.0
O I:GLU62 5.0 9.7 1.0
OH I:TYR123 5.0 6.0 1.0

Zinc binding site 10 out of 12 in 7stw

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Zinc binding site 10 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn201

b:16.5
occ:1.00
OD1 J:ASP63 2.1 7.4 1.0
OE2 J:GLU148 2.1 7.2 1.0
ND1 J:HIS66 2.3 5.6 1.0
OE1 J:GLU30 2.4 4.7 1.0
OE2 J:GLU30 2.9 4.7 1.0
CD J:GLU30 3.0 4.7 1.0
CE1 J:HIS66 3.0 5.6 1.0
CG J:ASP63 3.1 7.4 1.0
CD J:GLU148 3.3 7.2 1.0
O J:HOH320 3.3 8.0 1.0
CG J:HIS66 3.5 5.6 1.0
CB J:ASP63 3.8 7.4 1.0
OE1 J:GLU148 3.8 7.2 1.0
CA J:ASP63 3.8 7.4 1.0
OD2 J:ASP63 4.0 7.4 1.0
CB J:HIS66 4.0 5.6 1.0
FE J:FE202 4.0 24.8 1.0
NE2 J:HIS66 4.2 5.6 1.0
CD2 J:HIS66 4.5 5.6 1.0
CG J:GLU148 4.5 7.2 1.0
CG J:GLU30 4.5 4.7 1.0
N J:ASP63 4.5 7.4 1.0
CG2 J:ILE144 4.7 4.3 1.0
C J:ASP63 4.9 7.4 1.0
O J:ASP63 4.9 7.4 1.0
O J:GLU62 5.0 8.7 1.0

Reference:

B.Ramsay, B.Wiedenheft, M.Allen, G.H.Gauss, C.M.Lawrence, M.Young, T.Douglas. Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus To Be Published.
Page generated: Fri Dec 17 11:55:04 2021

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