Zinc in PDB 7rsf: Acetylornithine Deacetylase From Escherichia Coli

Enzymatic activity of Acetylornithine Deacetylase From Escherichia Coli

All present enzymatic activity of Acetylornithine Deacetylase From Escherichia Coli:
3.5.1.16;

Protein crystallography data

The structure of Acetylornithine Deacetylase From Escherichia Coli, PDB code: 7rsf was solved by J.Osipiuk, M.Endres, D.P.Becker, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.15 / 2.13
Space group P 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 46.7, 70.994, 289.884, 90, 90, 90
R / Rfree (%) 18.8 / 23.4

Other elements in 7rsf:

The structure of Acetylornithine Deacetylase From Escherichia Coli also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Acetylornithine Deacetylase From Escherichia Coli (pdb code 7rsf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Acetylornithine Deacetylase From Escherichia Coli, PDB code: 7rsf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7rsf

Go back to Zinc Binding Sites List in 7rsf
Zinc binding site 1 out of 2 in the Acetylornithine Deacetylase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Acetylornithine Deacetylase From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:39.8
occ:1.00
OD1 A:ASP112 1.9 37.1 1.0
O A:HOH655 2.0 36.4 1.0
NE2 A:HIS80 2.1 37.9 1.0
OE1 A:GLU169 2.1 37.2 1.0
CG A:ASP112 2.8 41.3 1.0
CD A:GLU169 2.8 38.4 1.0
OE2 A:GLU169 2.8 36.6 1.0
CE1 A:HIS80 2.9 39.2 1.0
OD2 A:ASP112 3.0 45.0 1.0
CD2 A:HIS80 3.2 38.2 1.0
OE1 A:GLU144 3.8 35.6 1.0
OE2 A:GLU145 3.9 50.0 1.0
O A:HOH641 4.1 47.7 1.0
ND1 A:HIS80 4.1 38.2 1.0
CB A:ASP112 4.2 40.9 1.0
CG A:GLU169 4.2 39.2 1.0
CG A:HIS80 4.3 37.2 1.0
CD A:GLU144 4.3 39.1 1.0
CG A:MET113 4.3 41.0 1.0
SD A:MET113 4.5 40.0 1.0
CD A:PRO170 4.5 47.3 1.0
CB A:MET113 4.5 40.8 1.0
CD A:GLU145 4.6 47.3 1.0
CA A:ASP112 4.6 41.7 1.0
OE2 A:GLU144 4.7 41.3 1.0
C A:ASP112 4.7 42.9 1.0
CB A:GLU169 4.8 38.4 1.0
O A:ASP112 4.9 43.2 1.0
CA A:GLU169 4.9 40.5 1.0

Zinc binding site 2 out of 2 in 7rsf

Go back to Zinc Binding Sites List in 7rsf
Zinc binding site 2 out of 2 in the Acetylornithine Deacetylase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Acetylornithine Deacetylase From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:37.1
occ:1.00
OD1 B:ASP112 1.9 39.6 1.0
NE2 B:HIS80 2.1 34.6 1.0
O B:HOH532 2.1 33.7 1.0
OE1 B:GLU169 2.1 39.9 1.0
OE2 B:GLU169 2.7 39.9 1.0
CD B:GLU169 2.7 36.7 1.0
CG B:ASP112 2.8 39.5 1.0
CE1 B:HIS80 3.0 35.3 1.0
CD2 B:HIS80 3.1 36.0 1.0
OD2 B:ASP112 3.1 45.9 1.0
OE1 B:GLU144 3.6 45.5 1.0
OE2 B:GLU145 3.8 42.0 1.0
O B:HOH563 3.9 52.0 1.0
ND1 B:HIS80 4.1 35.6 1.0
CB B:ASP112 4.2 39.2 1.0
CG B:GLU169 4.2 37.0 1.0
CG B:HIS80 4.2 35.6 1.0
CG B:MET113 4.3 38.5 1.0
CD B:GLU144 4.3 45.6 1.0
SD B:MET113 4.4 37.5 1.0
CD B:PRO170 4.4 38.6 1.0
CB B:MET113 4.5 39.2 1.0
CA B:ASP112 4.6 39.4 1.0
CD B:GLU145 4.6 41.2 1.0
C B:ASP112 4.7 40.9 1.0
OE2 B:GLU144 4.8 50.0 1.0
CB B:GLU169 4.8 38.3 1.0
O B:ASP112 4.9 38.1 1.0
CA B:GLU169 5.0 37.4 1.0

Reference:

J.Osipiuk, M.Endres, D.P.Becker, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Acetylornithine Deacetylase From Escherichia Coli To Be Published.
Page generated: Sun Aug 22 09:56:36 2021

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