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Zinc in PDB 7rrp: Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector

Enzymatic activity of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector

All present enzymatic activity of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector:
1.16.3.1;

Other elements in 7rrp:

The structure of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector also contains other interesting chemical elements:

Sodium (Na) 72 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 206;

Binding sites:

The binding sites of Zinc atom in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector (pdb code 7rrp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 206 binding sites of Zinc where determined in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector, PDB code: 7rrp:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 206 in 7rrp

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Zinc binding site 1 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:10.5
occ:1.00
HH12 A:ARG22 2.3 12.0 1.0
HH22 A:ARG22 2.4 15.0 1.0
O A:ASP15 2.8 9.0 1.0
HB3 A:ALA18 3.0 4.5 1.0
NH1 A:ARG22 3.1 12.0 1.0
HB2 A:ALA19 3.1 6.0 1.0
NH2 A:ARG22 3.2 15.0 1.0
HA A:ASP15 3.3 12.0 1.0
HB3 A:ASP15 3.3 13.5 1.0
H A:ALA19 3.4 7.5 1.0
HD21 A:LEU120 3.5 12.0 1.0
HD22 A:LEU120 3.6 12.0 1.0
CZ A:ARG22 3.6 27.0 1.0
C A:ASP15 3.6 13.5 1.0
CA A:ASP15 3.8 12.0 1.0
N A:ALA19 3.8 7.5 1.0
HH11 A:ARG22 3.8 12.0 1.0
CB A:ALA18 3.9 4.5 1.0
HH21 A:ARG22 3.9 15.0 1.0
CB A:ASP15 3.9 13.5 1.0
CB A:ALA19 4.0 6.0 1.0
CD2 A:LEU120 4.0 12.0 1.0
HB1 A:ALA18 4.0 4.5 1.0
HA A:ALA19 4.1 15.0 1.0
CA A:ALA19 4.2 15.0 1.0
C A:ALA18 4.4 18.0 1.0
HD23 A:LEU120 4.4 12.0 1.0
HB3 A:ALA19 4.4 6.0 1.0
CG A:ASP15 4.5 21.0 1.0
HB2 A:ALA18 4.5 4.5 1.0
HB1 A:ALA19 4.6 6.0 1.0
OD1 A:ASP15 4.6 16.5 1.0
CA A:ALA18 4.7 12.0 1.0
HB2 A:ASP15 4.8 13.5 1.0
H A:ALA18 4.8 9.0 1.0
N A:SER16 4.8 12.0 1.0
NE A:ARG22 4.9 12.0 1.0
HD11 A:LEU120 4.9 12.0 1.0

Zinc binding site 2 out of 206 in 7rrp

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Zinc binding site 2 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:16.5
occ:1.00
OD1 A:ASP92 2.7 30.0 1.0
OH A:TYR40 2.9 7.5 1.0
HE1 A:TYR40 2.9 10.5 1.0
OD2 A:ASP92 3.1 9.0 1.0
CG A:ASP92 3.3 21.0 1.0
HH A:TYR40 3.5 7.5 1.0
CE1 A:TYR40 3.6 10.5 1.0
HA A:GLU94 3.7 12.0 1.0
CZ A:TYR40 3.7 12.0 1.0
HH22 A:ARG43 4.1 12.0 1.0
H A:GLU94 4.1 12.0 1.0
HG22 A:VAL46 4.2 7.5 1.0
NH2 A:ARG43 4.3 12.0 1.0
HH12 A:ARG43 4.5 10.5 1.0
CA A:GLU94 4.5 12.0 1.0
HH21 A:ARG43 4.6 12.0 1.0
CZ A:ARG43 4.6 12.0 1.0
HG21 A:VAL46 4.6 7.5 1.0
NH1 A:ARG43 4.7 10.5 1.0
O A:HOH379 4.7 10.5 1.0
CG2 A:VAL46 4.7 7.5 1.0
CB A:ASP92 4.8 10.5 1.0
N A:GLU94 4.8 12.0 1.0
HG23 A:VAL46 4.8 7.5 1.0
CD1 A:TYR40 4.9 12.0 1.0

Zinc binding site 3 out of 206 in 7rrp

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Zinc binding site 3 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:6.0
occ:1.00
O A:HOH328 2.1 9.0 1.0
OE1 A:GLU27 2.2 10.5 1.0
HD2 A:HIS65 2.3 103.5 1.0
OE1 A:GLU62 2.3 15.0 1.0
CD2 A:HIS65 2.9 103.5 1.0
CD A:GLU62 3.0 15.0 1.0
CD A:GLU27 3.1 33.0 1.0
OE2 A:GLU62 3.2 57.0 1.0
OE2 A:GLU27 3.3 6.0 1.0
HG11 A:VAL110 3.4 9.0 1.0
HB2 A:HIS65 3.5 10.5 1.0
CG A:HIS65 3.5 22.5 1.0
HB3 A:HIS65 3.5 10.5 1.0
OE1 A:GLN141 3.6 31.5 1.0
HA A:GLU62 3.7 12.0 1.0
CB A:HIS65 3.7 10.5 1.0
NE2 A:HIS65 3.9 55.5 1.0
CG1 A:VAL110 4.2 9.0 1.0
HD2 A:TYR137 4.3 18.0 1.0
HG12 A:VAL110 4.3 9.0 1.0
HB3 A:GLU27 4.4 4.5 1.0
CG A:GLU62 4.4 13.5 1.0
CG A:GLU27 4.4 19.5 1.0
HE2 A:TYR137 4.5 16.5 1.0
CA A:GLU62 4.6 12.0 1.0
ND1 A:HIS65 4.6 13.5 1.0
HA A:GLU27 4.6 7.5 1.0
CD A:GLN141 4.6 13.5 1.0
HG13 A:VAL110 4.6 9.0 1.0
HG2 A:GLU62 4.7 13.5 1.0
HB3 A:GLU62 4.7 6.0 1.0
HD11 A:LEU114 4.8 9.0 1.0
CE1 A:HIS65 4.8 51.0 1.0
HG3 A:GLU27 4.8 19.5 1.0
CB A:GLU62 4.8 6.0 1.0
CB A:GLU27 4.9 4.5 1.0
HG21 A:VAL110 4.9 10.5 1.0
CD2 A:TYR137 5.0 18.0 1.0

Zinc binding site 4 out of 206 in 7rrp

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Zinc binding site 4 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn204

b:9.0
occ:1.00
HH21 S:ARG79 2.3 12.0 1.0
HA S:SER6 2.8 16.5 1.0
O A:HOH321 2.9 4.5 1.0
OD2 A:ASP45 2.9 12.0 1.0
HB3 A:ASP45 3.0 12.0 1.0
NH2 S:ARG79 3.1 12.0 1.0
HB2 S:SER6 3.2 9.0 1.0
HH22 S:ARG79 3.4 12.0 1.0
CG A:ASP45 3.4 12.0 1.0
CA S:SER6 3.6 16.5 1.0
CB A:ASP45 3.7 12.0 1.0
HE S:ARG79 3.8 21.0 1.0
CB S:SER6 3.9 9.0 1.0
HB2 A:ASP45 4.0 12.0 1.0
CZ S:ARG79 4.1 10.5 1.0
HH21 A:ARG43 4.2 12.0 1.0
H S:GLN7 4.2 12.0 1.0
N S:SER6 4.3 10.5 1.0
NE S:ARG79 4.3 21.0 1.0
OD1 A:ASP45 4.3 10.5 1.0
O S:THR5 4.3 18.0 1.0
OD2 A:ASP44 4.4 6.0 1.0
OG S:SER6 4.4 7.5 1.0
O S:HOH403 4.5 13.5 1.0
OD1 A:ASP44 4.5 9.0 1.0
C S:THR5 4.6 27.0 1.0
HG S:SER6 4.7 7.5 1.0
HB3 S:SER6 4.7 9.0 1.0
H S:SER6 4.7 10.5 1.0
H A:ASP45 4.7 12.0 1.0
N S:GLN7 4.8 12.0 1.0
C S:SER6 4.8 10.5 1.0
CG A:ASP44 4.9 9.0 1.0
NH2 A:ARG43 4.9 12.0 1.0
CA A:ASP45 5.0 10.5 1.0

Zinc binding site 5 out of 206 in 7rrp

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Zinc binding site 5 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn205

b:15.0
occ:1.00
HZ3 A:LYS146 1.8 9.0 1.0
HZ1 A:LYS146 2.2 9.0 1.0
OD1 A:ASP150 2.3 6.0 1.0
NZ A:LYS146 2.3 9.0 1.0
OD2 A:ASP150 2.5 15.0 1.0
CG A:ASP150 2.5 18.0 1.0
O A:HOH355 2.6 9.0 1.0
HZ2 A:LYS146 2.6 9.0 1.0
HA E:ALA47 2.8 7.5 1.0
HA E:ASP44 3.1 12.0 1.0
HB2 E:ALA47 3.2 12.0 1.0
O E:ASP42 3.2 6.0 1.0
O E:ARG43 3.3 10.5 1.0
O E:HOH373 3.5 9.0 1.0
HB1 E:ALA47 3.6 12.0 1.0
CA E:ALA47 3.6 7.5 1.0
CB E:ALA47 3.6 12.0 1.0
CE A:LYS146 3.7 9.0 1.0
O A:HOH370 3.7 7.5 1.0
C E:ARG43 3.8 15.0 1.0
CB A:ASP150 3.8 4.5 1.0
HB3 A:ASP150 3.8 4.5 1.0
HE2 A:LYS146 3.8 9.0 1.0
C E:ASP42 3.9 16.5 1.0
CA E:ASP44 4.0 12.0 1.0
H E:ALA47 4.0 4.5 1.0
HA E:ASP42 4.1 16.5 1.0
N E:ASP44 4.1 9.0 1.0
HD2 A:LYS146 4.2 7.5 1.0
N E:ALA47 4.3 4.5 1.0
HA A:ASP150 4.3 12.0 1.0
HE3 A:LYS146 4.3 9.0 1.0
HG3 A:LYS146 4.4 10.5 1.0
HB2 A:ASP150 4.5 4.5 1.0
CD A:LYS146 4.5 7.5 1.0
O E:HOH391 4.5 12.0 1.0
HB3 E:ALA47 4.6 12.0 1.0
CA E:ASP42 4.6 16.5 1.0
N E:ARG43 4.6 9.0 1.0
HE2 E:LYS49 4.6 73.5 0.5
CA A:ASP150 4.6 12.0 1.0
C E:ALA47 4.7 15.0 1.0
OD1 E:ASP42 4.7 10.5 1.0
CA E:ARG43 4.7 12.0 1.0
H E:ASP44 4.8 9.0 1.0
C E:ASP44 4.8 13.5 1.0
HE3 E:LYS49 4.8 73.5 0.5
O E:PHE41 4.8 10.5 1.0
HG2 E:LYS49 4.9 30.0 0.5
O A:HOH369 4.9 7.5 1.0
O E:ASP44 4.9 7.5 1.0
HB3 E:ASP44 4.9 9.0 1.0
CB E:ASP44 4.9 9.0 1.0
O E:HOH310 4.9 12.0 1.0
CG A:LYS146 4.9 10.5 1.0
HG3 E:LYS49 5.0 30.0 0.5
HA E:ARG43 5.0 12.0 1.0
HB2 E:ASP44 5.0 9.0 1.0

Zinc binding site 6 out of 206 in 7rrp

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Zinc binding site 6 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn206

b:15.0
occ:1.00
HG2 S:LYS87 2.7 15.0 1.0
OD1 A:ASP84 2.8 13.5 1.0
HZ2 S:LYS87 2.8 24.0 1.0
HD2 S:LYS86 3.2 22.5 1.0
OD2 A:ASP84 3.2 22.5 1.0
H S:LYS87 3.3 9.0 1.0
CG A:ASP84 3.4 18.0 1.0
HB3 S:LYS86 3.6 6.0 1.0
NZ S:LYS87 3.6 24.0 1.0
CG S:LYS87 3.6 15.0 1.0
HZ3 S:LYS87 3.7 24.0 1.0
HD3 S:LYS87 3.7 19.5 1.0
HG3 S:LYS87 4.1 15.0 1.0
N S:LYS87 4.1 9.0 1.0
CD S:LYS87 4.1 19.5 1.0
CD S:LYS86 4.1 22.5 1.0
HA S:LYS86 4.1 13.5 1.0
HZ1 S:LYS87 4.2 24.0 1.0
CB S:LYS86 4.3 6.0 1.0
CE S:LYS87 4.4 43.5 1.0
HD3 S:LYS86 4.4 22.5 1.0
HG3 S:LYS86 4.5 9.0 1.0
CG S:LYS86 4.5 9.0 1.0
O A:HOH318 4.6 6.0 1.0
CA S:LYS86 4.6 13.5 1.0
CB S:LYS87 4.6 9.0 1.0
HB3 S:LYS87 4.7 9.0 1.0
HE3 S:LYS87 4.7 43.5 1.0
O S:LYS87 4.8 7.5 1.0
HZ2 S:LYS86 4.8 40.5 1.0
C S:LYS86 4.8 13.5 1.0
CA S:LYS87 4.9 10.5 1.0
CB A:ASP84 4.9 9.0 1.0

Zinc binding site 7 out of 206 in 7rrp

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Zinc binding site 7 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn209

b:12.0
occ:1.00
HG2 A:LYS49 1.8 51.0 0.5
HE2 A:LYS49 2.3 33.0 0.5
HZ3 A:LYS172 2.4 18.0 1.0
CG A:LYS49 2.6 51.0 0.5
OD1 A:ASP171 2.6 4.5 1.0
HG3 A:LYS49 2.8 51.0 0.5
O A:HOH378 2.8 9.0 1.0
HB2 A:LYS49 2.9 9.0 0.5
CE A:LYS49 2.9 33.0 0.5
CD A:LYS49 3.1 99.0 0.5
HE3 A:LYS49 3.1 33.0 0.5
NZ A:LYS172 3.2 18.0 1.0
HD3 A:LYS49 3.2 99.0 0.5
HD3 A:LYS172 3.3 25.5 1.0
ND2 A:ASN50 3.4 21.0 1.0
HD21 A:ASN50 3.4 21.0 1.0
HE2 A:LYS172 3.4 18.0 1.0
H A:ASN50 3.4 9.0 1.0
HD22 A:ASN50 3.4 21.0 1.0
H A:LYS49 3.4 9.0 1.0
HZ1 A:LYS172 3.5 18.0 1.0
O A:HOH386 3.6 25.5 1.0
CE A:LYS172 3.7 18.0 1.0
O A:HOH356 3.7 3.0 1.0
CG A:ASP171 3.7 13.5 1.0
HZ2 A:LYS172 3.8 18.0 1.0
CB A:LYS49 3.9 9.0 0.5
CB A:LYS49 3.9 9.0 0.5
CG A:ASN50 3.9 10.5 1.0
HD2 A:LYS49 3.9 69.0 0.5
CD A:LYS172 3.9 25.5 1.0
N A:ASN50 4.0 9.0 1.0
N A:LYS49 4.0 9.0 1.0
HD2 A:LYS49 4.0 99.0 0.5
O M:HOH325 4.1 6.0 1.0
HB3 A:LYS49 4.1 9.0 0.5
OD2 A:ASP171 4.1 7.5 1.0
HB2 A:ASN50 4.2 9.0 1.0
NZ A:LYS49 4.3 111.0 0.5
HG3 A:LYS49 4.3 28.5 0.5
CA A:LYS49 4.4 10.5 1.0
OD1 A:ASN50 4.4 10.5 1.0
HB3 A:LYS49 4.4 9.0 0.5
HZ3 A:LYS49 4.5 111.0 0.5
CB A:ASN50 4.5 9.0 1.0
CG A:LYS49 4.5 28.5 0.5
HZ1 A:LYS49 4.5 111.0 0.5
HD2 A:LYS172 4.5 25.5 1.0
C A:LYS49 4.6 13.5 1.0
HB2 A:LYS49 4.6 9.0 0.5
HE3 A:LYS172 4.6 18.0 1.0
HA A:LEU48 4.7 13.5 1.0
CD A:LYS49 4.7 69.0 0.5
HA A:LYS172 4.7 10.5 1.0
HG2 A:LYS172 4.7 13.5 1.0
CA A:ASN50 4.9 13.5 1.0
O M:HOH327 4.9 9.0 1.0
HZ2 A:LYS49 4.9 111.0 0.5
HB3 A:ASP171 4.9 6.0 1.0
CB A:ASP171 5.0 6.0 1.0
C A:LEU48 5.0 10.5 1.0
CG A:LYS172 5.0 13.5 1.0

Zinc binding site 8 out of 206 in 7rrp

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Zinc binding site 8 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn211

b:6.0
occ:1.00
OE1 F:GLU134 2.4 12.0 1.0
OE1 A:GLU134 2.4 13.5 1.0
OE1 T:GLU134 2.4 15.0 1.0
OD2 A:ASP131 2.9 36.0 1.0
OD2 F:ASP131 2.9 33.0 1.0
OD2 T:ASP131 2.9 22.5 1.0
CD F:GLU134 3.6 13.5 1.0
CD A:GLU134 3.6 15.0 1.0
CD T:GLU134 3.6 12.0 1.0
CG F:ASP131 4.0 25.5 1.0
CG A:ASP131 4.0 25.5 1.0
CG T:ASP131 4.0 24.0 1.0
HA A:ASP131 4.1 13.5 1.0
HA T:ASP131 4.1 15.0 1.0
HA F:ASP131 4.1 12.0 1.0
HB2 F:GLU134 4.2 13.5 1.0
HB2 A:GLU134 4.2 9.0 1.0
HB2 T:GLU134 4.2 12.0 1.0
OE2 F:GLU134 4.3 10.5 1.0
OE2 A:GLU134 4.3 12.0 1.0
OE2 T:GLU134 4.3 12.0 1.0
HB2 A:ASP131 4.4 19.5 1.0
HB2 T:ASP131 4.4 16.5 1.0
HB2 F:ASP131 4.4 21.0 1.0
HB3 F:GLU134 4.5 13.5 1.0
HB3 A:GLU134 4.5 9.0 1.0
HB3 T:GLU134 4.5 12.0 1.0
CB A:ASP131 4.7 19.5 1.0
CB F:ASP131 4.7 21.0 1.0
CB T:ASP131 4.7 16.5 1.0
CB A:GLU134 4.7 9.0 1.0
CB F:GLU134 4.7 13.5 1.0
CB T:GLU134 4.7 12.0 1.0
CG F:GLU134 4.7 10.5 1.0
CG A:GLU134 4.7 9.0 1.0
CG T:GLU134 4.7 13.5 1.0
CA A:ASP131 4.8 13.5 1.0
CA F:ASP131 4.8 12.0 1.0
CA T:ASP131 4.8 15.0 1.0
OD1 A:ASP131 4.9 19.5 1.0
OD1 F:ASP131 4.9 24.0 1.0
OD1 T:ASP131 4.9 24.0 1.0

Zinc binding site 9 out of 206 in 7rrp

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Zinc binding site 9 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn212

b:3.0
occ:1.00
NE2 A:HIS173 3.0 10.5 1.0
NE2 I:HIS173 3.0 10.5 1.0
NE2 E:HIS173 3.0 9.0 1.0
NE2 M:HIS173 3.0 10.5 1.0
HD22 A:LEU169 3.2 9.0 1.0
HD22 M:LEU169 3.2 9.0 1.0
HD22 I:LEU169 3.2 7.5 1.0
HD22 E:LEU169 3.2 10.5 1.0
HD21 A:LEU169 3.5 9.0 1.0
HD21 E:LEU169 3.5 10.5 1.0
HD21 M:LEU169 3.5 9.0 1.0
HD21 I:LEU169 3.5 7.5 1.0
CE1 I:HIS173 3.8 13.5 1.0
CE1 A:HIS173 3.8 12.0 1.0
CE1 E:HIS173 3.8 13.5 1.0
CE1 M:HIS173 3.8 12.0 1.0
CD2 M:LEU169 3.8 9.0 1.0
CD2 A:LEU169 3.8 9.0 1.0
CD2 E:LEU169 3.8 10.5 1.0
CD2 I:LEU169 3.8 7.5 1.0
HE1 I:HIS173 3.8 13.5 1.0
HE1 A:HIS173 3.8 12.0 1.0
HE1 E:HIS173 3.8 13.5 1.0
HE1 M:HIS173 3.8 12.0 1.0
CD2 E:HIS173 4.0 10.5 1.0
CD2 M:HIS173 4.0 10.5 1.0
CD2 A:HIS173 4.0 9.0 1.0
CD2 I:HIS173 4.0 9.0 1.0
HD2 E:HIS173 4.1 10.5 1.0
HD2 M:HIS173 4.1 10.5 1.0
HD2 A:HIS173 4.1 9.0 1.0
HD2 I:HIS173 4.1 9.0 1.0
HD23 M:LEU169 4.4 9.0 1.0
HD23 A:LEU169 4.4 9.0 1.0
HD23 E:LEU169 4.4 10.5 1.0
HD23 I:LEU169 4.4 7.5 1.0
HD13 A:LEU169 4.4 6.0 1.0
HD13 E:LEU169 4.4 6.0 1.0
HD13 I:LEU169 4.4 6.0 1.0
HD13 M:LEU169 4.4 7.5 1.0
HD11 E:LEU169 4.9 6.0 1.0
HD11 I:LEU169 4.9 6.0 1.0
HD11 A:LEU169 4.9 6.0 1.0
HD11 M:LEU169 4.9 7.5 1.0
ND1 A:HIS173 5.0 18.0 1.0
ND1 I:HIS173 5.0 15.0 1.0
ND1 E:HIS173 5.0 13.5 1.0
ND1 M:HIS173 5.0 16.5 1.0
CD1 M:LEU169 5.0 7.5 1.0
CD1 A:LEU169 5.0 6.0 1.0
CD1 E:LEU169 5.0 6.0 1.0
CD1 I:LEU169 5.0 6.0 1.0
CG A:LEU169 5.0 7.5 1.0
CG E:LEU169 5.0 9.0 1.0
CG I:LEU169 5.0 7.5 1.0
CG M:LEU169 5.0 9.0 1.0

Zinc binding site 10 out of 206 in 7rrp

Go back to Zinc Binding Sites List in 7rrp
Zinc binding site 10 out of 206 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn213

b:3.0
occ:1.00
H A:ASP44 2.0 7.5 1.0
HH12 S:ARG79 2.2 10.5 1.0
O S:ASN74 2.6 6.0 1.0
OD2 A:ASP44 2.7 6.0 1.0
HB3 A:ASP44 2.7 12.0 1.0
N A:ASP44 2.9 7.5 1.0
HE2 M:LYS146 3.0 7.5 1.0
NH1 S:ARG79 3.0 10.5 1.0
HA2 S:GLY77 3.0 9.0 1.0
HH22 S:ARG79 3.0 12.0 1.0
HA A:ARG43 3.1 12.0 1.0
HA S:ASN74 3.2 15.0 1.0
CB A:ASP44 3.3 12.0 1.0
CG A:ASP44 3.4 9.0 1.0
C S:ASN74 3.5 12.0 1.0
HH11 S:ARG79 3.6 10.5 1.0
HB3 S:ASN74 3.6 9.0 1.0
CA A:ASP44 3.7 12.0 1.0
NH2 S:ARG79 3.7 12.0 1.0
CA S:ASN74 3.7 15.0 1.0
HG21 S:VAL8 3.7 9.0 1.0
H S:GLY77 3.8 9.0 1.0
HG S:SER6 3.8 7.5 1.0
C A:ARG43 3.8 15.0 1.0
CZ S:ARG79 3.8 10.5 1.0
CA A:ARG43 3.8 12.0 1.0
HB3 A:ARG43 3.9 10.5 1.0
CE M:LYS146 3.9 7.5 1.0
CA S:GLY77 3.9 9.0 1.0
CB S:ASN74 4.0 9.0 1.0
HD3 M:LYS146 4.1 7.5 1.0
HE3 M:LYS146 4.1 7.5 1.0
OD1 S:ASN74 4.2 4.5 1.0
HB2 A:ASP44 4.2 12.0 1.0
HG2 A:ARG43 4.3 10.5 1.0
N S:GLY77 4.3 9.0 1.0
HA A:ASP44 4.3 12.0 1.0
CB A:ARG43 4.3 10.5 1.0
H A:ASP45 4.3 12.0 1.0
CG S:ASN74 4.4 13.5 1.0
HG22 S:VAL8 4.5 9.0 1.0
CD M:LYS146 4.5 7.5 1.0
HH21 S:ARG79 4.5 12.0 1.0
CG2 S:VAL8 4.5 9.0 1.0
HA3 S:GLY77 4.6 9.0 1.0
OG S:SER6 4.6 7.5 1.0
HD2 M:LYS146 4.6 7.5 1.0
OD1 A:ASP44 4.6 9.0 1.0
O S:GLY78 4.6 10.5 1.0
C S:GLY77 4.6 13.5 1.0
N S:GLN75 4.8 9.0 1.0
C A:ASP44 4.8 15.0 1.0
CG A:ARG43 4.8 10.5 1.0
O A:ASP42 4.9 7.5 1.0
N A:ASP45 4.9 12.0 1.0
HZ1 M:LYS146 4.9 9.0 1.0
NZ M:LYS146 4.9 9.0 1.0
HB2 S:SER6 4.9 9.0 1.0
HG23 S:VAL8 5.0 9.0 1.0
HB2 S:ASN74 5.0 9.0 1.0
O A:ARG43 5.0 9.0 1.0

Reference:

K.Zhang, G.D.Pintilie, S.Li, M.F.Schmid, W.Chiu. Resolving Individual Atoms of Protein Complex By Cryo-Electron Microscopy Cell Res. V. 30 1136 2020.
ISSN: ISSN 1748-7838
PubMed: 33139928
DOI: 10.1007/S41048-016-0026-3
Page generated: Sun Aug 22 09:56:51 2021

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