Zinc in PDB 7rbr: The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin

Enzymatic activity of The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin

All present enzymatic activity of The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin:
3.4.19.12;

Protein crystallography data

The structure of The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin, PDB code: 7rbr was solved by J.Osipiuk, C.Tesar, M.Endres, B.T.Lanham, P.Wydorski, D.Fushman, L.Joachimiak, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.14 / 1.88
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 148.046, 50.136, 71.927, 90, 111.84, 90
R / Rfree (%) 18.7 / 22.8

Other elements in 7rbr:

The structure of The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin (pdb code 7rbr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin, PDB code: 7rbr:

Zinc binding site 1 out of 1 in 7rbr

Go back to Zinc Binding Sites List in 7rbr
Zinc binding site 1 out of 1 in the The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:58.2
occ:1.00
SG A:CYS189 2.2 48.1 1.0
SG A:CYS192 2.2 59.1 1.0
SG A:CYS224 2.2 54.9 1.0
SG A:CYS226 2.4 69.8 1.0
CB A:CYS226 3.1 64.9 1.0
CB A:CYS189 3.2 45.2 1.0
CB A:CYS224 3.3 55.8 1.0
CB A:CYS192 3.4 56.0 1.0
N A:CYS192 4.0 53.6 1.0
N A:CYS226 4.2 62.1 1.0
CA A:CYS226 4.2 65.4 1.0
CA A:CYS192 4.3 54.5 1.0
CB A:THR191 4.5 57.5 1.0
CA A:CYS189 4.6 43.6 1.0
CA A:CYS224 4.7 55.2 1.0
CB A:LYS228 4.9 69.6 1.0
C A:CYS224 4.9 58.6 1.0
CG A:LYS228 4.9 75.7 1.0

Reference:

J.Osipiuk, C.Tesar, M.Endres, B.T.Lanham, P.Wydorski, D.Fushman, L.Joachimiak, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with A LYS48-Linked Di-Ubiquitin To Be Published.
Page generated: Fri Nov 5 17:00:08 2021

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