Zinc in PDB 7rag: Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein

Enzymatic activity of Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein

All present enzymatic activity of Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein:
3.5.1.28;

Protein crystallography data

The structure of Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein, PDB code: 7rag was solved by B.E.Eckenroth, S.Doublie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.55 / 2.40
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.185, 105.185, 154.771, 90, 90, 120
R / Rfree (%) 20.3 / 24.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein (pdb code 7rag). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein, PDB code: 7rag:

Zinc binding site 1 out of 1 in 7rag

Go back to Zinc Binding Sites List in 7rag
Zinc binding site 1 out of 1 in the Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Cwld Amidase From Clostridioides Difficile in Complex with the Gers Lipoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:64.3
occ:1.00
OE1 B:GLU65 2.1 67.8 1.0
NE2 B:HIS49 2.3 63.8 1.0
ND1 B:HIS133 2.3 59.8 1.0
CD B:GLU65 2.9 72.9 1.0
OE2 B:GLU65 2.9 76.4 1.0
CD2 B:HIS49 3.1 61.8 1.0
CE1 B:HIS133 3.2 54.7 1.0
CG B:HIS133 3.2 59.5 1.0
CE1 B:HIS49 3.3 64.8 1.0
CB B:HIS133 3.5 61.3 1.0
O B:LEU134 3.9 76.2 1.0
O B:HOH409 4.2 62.7 1.0
CG B:HIS49 4.3 67.7 1.0
CG B:GLU65 4.3 74.4 1.0
NE2 B:HIS133 4.4 50.4 1.0
N B:LEU134 4.4 63.9 1.0
ND1 B:HIS49 4.4 67.9 1.0
CD2 B:HIS133 4.4 57.5 1.0
CA B:HIS133 4.4 59.7 1.0
ND2 B:ASN69 4.8 58.6 1.0
CB B:GLU65 4.8 70.6 1.0
C B:LEU134 4.9 71.0 1.0
C B:HIS133 5.0 60.6 1.0

Reference:

C.A.Feliciano, B.E.Eckenroth, O.R.Diaz, S.Doublie, A.Shen. A Lipoprotein Allosterically Activates the Cwld Amidase During Clostrioides Difficile Spore Formation Plos Genet. 2021.
ISSN: ESSN 1553-7404
Page generated: Fri Sep 24 17:11:54 2021

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