Zinc in PDB 7r72: State E1 Nucleolar 60S Ribosome Biogenesis Intermediate - SPB4 Local Model

All present enzymatic activity of State E1 Nucleolar 60S Ribosome Biogenesis Intermediate - SPB4 Local Model:
2.1.1.167; 3.6.4.13;

The binding sites of Zinc atom in the State E1 Nucleolar 60S Ribosome Biogenesis Intermediate - SPB4 Local Model (pdb code 7r72). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the State E1 Nucleolar 60S Ribosome Biogenesis Intermediate - SPB4 Local Model, PDB code: 7r72:

Zinc binding site 1 out of 1 in the State E1 Nucleolar 60S Ribosome Biogenesis Intermediate - SPB4 Local Model


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of State E1 Nucleolar 60S Ribosome Biogenesis Intermediate - SPB4 Local Model within 5.0Å range: probe atom residue distance (Å) B Occ g:Zn201 b:42.3 occ:1.00 SG g:CYS81 2.3 15.2 1.0 SG g:CYS47 2.3 18.1 1.0 SG g:CYS84 2.3 14.2 1.0 SG g:CYS44 2.3 16.4 1.0 CB g:CYS44 3.3 16.4 1.0 CB g:CYS84 3.4 14.2 1.0 CB g:CYS47 3.5 18.1 1.0 CB g:CYS81 3.7 15.2 1.0 N g:CYS47 3.7 18.1 1.0 N g:CYS81 4.0 15.2 1.0 CA g:CYS47 4.2 18.1 1.0 OG g:SER49 4.2 21.7 1.0 CB g:ASP46 4.3 15.5 1.0 CA g:CYS81 4.4 15.2 1.0 N g:CYS84 4.5 14.2 1.0 CA g:CYS84 4.6 14.2 1.0 C g:ASP46 4.7 15.5 1.0 CA g:CYS44 4.7 16.4 1.0 N g:ASP46 4.8 15.5 1.0 CA g:ASP46 4.8 15.5 1.0 C g:CYS47 5.0 18.1 1.0 C g:CYS81 5.0 15.2 1.0

V.E.Cruz, K.Sekulski, N.Peddada, C.Sailer, S.Balasubramanian, C.S.Weirich, F.Stengel, J.P.Erzberger. Sequence-Specific Remodeling of A Topologically Complex Rnp Substrate By SPB4. Nat.Struct.Mol.Biol. V. 29 1228 2022.
ISSN: ESSN 1545-9985
PubMed: 36482249
DOI: 10.1038/S41594-022-00874-9