Zinc in PDB 7qiy: Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.

Enzymatic activity of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.

All present enzymatic activity of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.:
2.7.11.24;

Other elements in 7qiy:

The structure of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. also contains other interesting chemical elements:

Potassium (K) 10 atoms
Magnesium (Mg) 28 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. (pdb code 7qiy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit., PDB code: 7qiy:

Zinc binding site 1 out of 1 in 7qiy

Go back to Zinc Binding Sites List in 7qiy
Zinc binding site 1 out of 1 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn102

b:42.6
occ:1.00
SG N:CYS39 2.2 12.7 1.0
SG N:CYS24 2.3 16.9 1.0
SG N:CYS42 2.3 13.2 1.0
SG N:CYS21 2.4 15.4 1.0
HB2 N:CYS42 2.9 13.2 1.0
HB3 N:CYS39 3.1 12.7 1.0
HB3 N:CYS24 3.1 16.9 1.0
CB N:CYS42 3.2 13.2 1.0
H N:CYS39 3.2 12.7 1.0
HB2 N:CYS21 3.3 15.4 1.0
CB N:CYS21 3.3 15.4 1.0
CB N:CYS39 3.3 12.7 1.0
H N:CYS24 3.3 16.9 1.0
HB3 N:CYS21 3.3 15.4 1.0
CB N:CYS24 3.3 16.9 1.0
H N:CYS42 3.6 13.2 1.0
HB N:VAL23 3.7 17.2 1.0
HB3 N:CYS42 3.8 13.2 1.0
N N:CYS24 3.9 16.9 1.0
N N:CYS39 3.9 12.7 1.0
HB2 N:CYS39 4.0 12.7 1.0
HB2 N:CYS24 4.1 16.9 1.0
HO2' 2:G1437 4.1 11.9 0.0
CA N:CYS39 4.1 12.7 1.0
CA N:CYS24 4.2 16.9 1.0
HB3 N:ASN26 4.2 13.1 1.0
N N:CYS42 4.2 13.2 1.0
H N:ASN26 4.3 13.1 1.0
CA N:CYS42 4.3 13.2 1.0
O2' 2:G1437 4.5 11.9 1.0
H22 2:G1437 4.5 11.9 1.0
H N:VAL23 4.6 17.2 1.0
H N:GLY25 4.6 16.5 1.0
CB N:VAL23 4.6 17.2 1.0
H1' 2:G1437 4.7 11.9 1.0
HB2 N:ASN26 4.7 13.1 1.0
O N:CYS39 4.7 12.7 1.0
HA N:CYS42 4.7 13.2 1.0
CA N:CYS21 4.7 15.4 1.0
C N:CYS39 4.7 12.7 1.0
HB2 N:GLN41 4.8 10.9 1.0
CB N:ASN26 4.9 13.1 1.0
C N:CYS24 4.9 16.9 1.0
HA N:CYS38 4.9 15.4 1.0
C N:VAL23 4.9 17.2 1.0
N N:GLY25 4.9 16.5 1.0
HA N:CYS39 5.0 12.7 1.0
HA N:CYS24 5.0 16.9 1.0
HA N:CYS21 5.0 15.4 1.0

Reference:

P.Cottilli, Y.Itoh, Y.Nobe, A.S.Petrov, P.Lison, M.Taoka, A.Amunts. Cryo-Em Structure and Rrna Modification Sites of A Plant Ribosome. Plant Commun. V. 3 00342 2022.
ISSN: ISSN 2590-3462
PubMed: 35643637
DOI: 10.1016/J.XPLC.2022.100342
Page generated: Sat Apr 8 02:32:58 2023

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