Zinc in PDB 7pvk: X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.

Protein crystallography data

The structure of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg., PDB code: 7pvk was solved by C.A.Schmitz, M.Madej, J.Potempa, M.Sola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.90 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.63, 103.77, 132.21, 90, 98.5, 90
R / Rfree (%) 19.4 / 22.3

Other elements in 7pvk:

The structure of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. also contains other interesting chemical elements:

Fluorine (F) 12 atoms
Magnesium (Mg) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. (pdb code 7pvk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg., PDB code: 7pvk:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 1 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn603

b:72.0
occ:1.00
OD1 A:ASP239 1.9 66.4 1.0
NE2 A:HIS416 1.9 69.6 1.0
OD2 A:ASP415 2.2 65.0 1.0
OD2 A:ASP239 2.4 67.1 1.0
CG A:ASP239 2.4 63.5 1.0
CD2 A:HIS416 2.6 69.5 1.0
HD2 A:HIS416 2.6 83.5 1.0
HB2 A:ALA272 2.7 99.3 1.0
CG A:ASP415 3.0 68.3 1.0
CE1 A:HIS416 3.0 70.6 1.0
OD1 A:ASP415 3.1 64.0 1.0
P E:G1 3.4 78.9 1.0
HE1 A:HIS416 3.4 84.8 1.0
H A:ALA272 3.4 95.3 1.0
CB A:ALA272 3.6 82.7 1.0
N A:ALA272 3.8 79.3 1.0
CG A:HIS416 3.8 69.5 1.0
OP1 E:G1 3.8 80.4 1.0
CB A:ASP239 3.9 64.4 1.0
HA A:ALA272 3.9 90.6 1.0
H A:ASN240 3.9 79.0 1.0
ND1 A:HIS416 3.9 69.7 1.0
CA A:ALA272 4.0 75.4 1.0
HB3 A:ALA272 4.0 99.3 1.0
OD1 A:ASP361 4.1 68.9 1.0
H5'' E:G1 4.1 92.6 1.0
HA A:ASP239 4.1 84.5 1.0
HA A:ALA271 4.1 103.1 1.0
HB1 A:ALA272 4.2 99.3 1.0
O5' E:G1 4.2 78.9 1.0
HB2 A:ASN240 4.2 83.5 1.0
HD3 A:ARG276 4.2 82.5 1.0
HE1 A:HIS500 4.2 84.9 1.0
HH11 A:ARG276 4.3 87.6 1.0
HB2 A:ASP361 4.3 83.5 1.0
N A:ASN240 4.3 65.7 1.0
HB3 A:ASP239 4.3 77.4 1.0
HB2 A:ASP239 4.3 77.4 1.0
OP2 E:G1 4.4 79.7 1.0
CB A:ASP415 4.4 69.8 1.0
CA A:ASP239 4.4 70.4 1.0
CE1 A:HIS500 4.5 70.7 1.0
ZN A:ZN604 4.5 72.4 1.0
C A:ALA271 4.5 79.5 1.0
HB2 A:ASP415 4.5 83.8 1.0
CG A:ASP361 4.6 65.7 1.0
C5' E:G1 4.7 77.5 1.0
HB2 A:ARG276 4.7 80.8 1.0
C A:ASP239 4.7 65.7 1.0
HD1 A:HIS416 4.8 83.7 1.0
CA A:ALA271 4.8 85.9 1.0
HB3 A:ASP415 4.9 83.8 1.0
HA A:ASN240 4.9 79.7 1.0
CB A:ASP361 5.0 69.5 1.0
NH1 A:ARG276 5.0 72.9 1.0

Zinc binding site 2 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 2 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn604

b:72.4
occ:1.00
OD1 A:ASP361 1.7 68.9 1.0
NE2 A:HIS500 2.0 68.4 1.0
NE2 A:HIS365 2.0 65.9 1.0
OP2 E:G1 2.0 79.7 1.0
CE1 A:HIS500 2.7 70.7 1.0
CG A:ASP361 2.7 65.7 1.0
HE1 A:HIS500 2.8 84.9 1.0
CE1 A:HIS365 2.9 65.3 1.0
CD2 A:HIS365 2.9 65.4 1.0
P E:G1 3.0 78.9 1.0
CD2 A:HIS500 3.1 69.7 1.0
OD2 A:ASP361 3.1 66.0 1.0
HE1 A:HIS365 3.1 78.4 1.0
HD2 A:HIS365 3.2 78.6 1.0
HD22 A:ASN240 3.4 92.1 1.0
HE1 A:HIS416 3.4 84.8 1.0
HD2 A:HIS500 3.4 83.7 1.0
ND1 A:HIS500 3.8 68.5 1.0
OP1 E:G1 3.9 80.4 1.0
H5' E:G1 4.0 92.6 1.0
ND1 A:HIS365 4.0 69.5 1.0
CE1 A:HIS416 4.0 70.6 1.0
ND2 A:ASN240 4.0 76.7 1.0
CG A:HIS365 4.0 63.7 1.0
CG A:HIS500 4.1 68.0 1.0
CB A:ASP361 4.1 69.5 1.0
O5' E:G1 4.2 78.9 1.0
HB2 A:ASP361 4.2 83.5 1.0
NE2 A:HIS416 4.2 69.6 1.0
HD21 A:ASN240 4.2 92.1 1.0
HB2 A:ASN240 4.4 83.5 1.0
C5' E:G1 4.5 77.5 1.0
HA A:ASP361 4.5 81.0 1.0
ZN A:ZN603 4.5 72.0 1.0
H5'' E:G1 4.6 92.6 1.0
HD1 A:HIS500 4.6 82.2 1.0
O A:ASP361 4.6 69.9 1.0
OD1 A:ASP239 4.6 66.4 1.0
HB3 A:ASP361 4.7 83.5 1.0
HD1 A:HIS365 4.8 83.5 1.0
CA A:ASP361 4.8 67.9 1.0
O E:HOH1002 4.9 91.1 1.0
C A:ASP361 5.0 68.0 1.0
CG A:ASN240 5.0 72.6 1.0

Zinc binding site 3 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 3 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn603

b:59.3
occ:1.00
HE2 B:HIS416 1.7 77.9 1.0
OP2 G:G1 1.8 61.5 1.0
OD2 B:ASP415 2.1 56.4 1.0
OD1 B:ASP239 2.1 55.8 1.0
NE2 B:HIS416 2.2 64.8 1.0
OD2 B:ASP239 2.4 51.4 1.0
CG B:ASP239 2.5 53.0 1.0
HB2 B:ALA272 2.7 64.4 1.0
CG B:ASP415 2.9 56.1 1.0
CE1 B:HIS416 2.9 60.4 1.0
OD1 B:ASP415 3.0 55.2 1.0
CD2 B:HIS416 3.0 55.4 1.0
HE1 B:HIS416 3.1 72.5 1.0
P G:G1 3.3 64.7 1.0
HD2 B:HIS416 3.3 66.5 1.0
H B:ALA272 3.4 65.0 1.0
CB B:ALA272 3.7 53.6 1.0
H B:ASN240 3.8 74.9 1.0
N B:ALA272 3.8 54.1 1.0
HB2 B:ASN240 3.9 68.8 1.0
ND1 B:HIS416 3.9 52.3 1.0
H5'' G:G1 3.9 78.1 1.0
HA B:ALA272 4.0 67.0 1.0
CG B:HIS416 4.0 60.7 1.0
CB B:ASP239 4.0 48.5 1.0
OP1 G:G1 4.0 73.2 1.0
CA B:ALA272 4.1 55.8 1.0
OP3 G:G1 4.1 67.4 1.0
HB3 B:ALA272 4.1 64.4 1.0
O5' G:G1 4.2 63.6 1.0
N B:ASN240 4.2 62.4 1.0
HB1 B:ALA272 4.3 64.4 1.0
HA B:ASP239 4.3 67.1 1.0
HA B:ALA271 4.3 73.1 1.0
OD1 B:ASP361 4.3 62.2 1.0
HD3 B:ARG276 4.3 66.5 1.0
CB B:ASP415 4.3 50.0 1.0
HB2 B:ASP361 4.4 74.4 1.0
HE1 B:HIS500 4.4 68.2 1.0
CG B:ASP361 4.4 61.4 1.0
HB2 B:ASP239 4.4 58.3 1.0
HB2 B:ASP415 4.5 60.1 1.0
ZN B:ZN610 4.5 60.2 1.0
HB3 B:ASP239 4.5 58.3 1.0
HH11 B:ARG276 4.5 76.8 1.0
C5' G:G1 4.5 65.0 1.0
CA B:ASP239 4.6 55.9 1.0
CE1 B:HIS500 4.6 56.8 1.0
NE2 B:HIS500 4.7 61.6 1.0
C B:ALA271 4.7 59.7 1.0
C B:ASP239 4.7 55.0 1.0
OD2 B:ASP361 4.7 62.1 1.0
CB B:ASN240 4.7 57.3 1.0
HB3 B:ASP415 4.8 60.1 1.0
HA B:ASN240 4.8 75.2 1.0
H5' G:G1 4.8 78.1 1.0
CA B:ASN240 4.9 62.6 1.0
HB2 B:ARG276 4.9 69.3 1.0
CB B:ASP361 4.9 62.4 1.0
CA B:ALA271 5.0 60.8 1.0

Zinc binding site 4 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 4 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn610

b:60.2
occ:1.00
OP1 G:G1 1.6 73.2 1.0
NE2 B:HIS500 2.0 61.6 1.0
NE2 B:HIS365 2.1 63.4 1.0
OD1 B:ASP361 2.1 62.2 1.0
OD2 B:ASP361 2.6 62.1 1.0
CG B:ASP361 2.7 61.4 1.0
P G:G1 2.9 64.7 1.0
CD2 B:HIS500 3.0 55.0 1.0
CD2 B:HIS365 3.0 60.9 1.0
CE1 B:HIS365 3.0 59.5 1.0
CE1 B:HIS500 3.0 56.8 1.0
HD2 B:HIS500 3.2 66.1 1.0
HD2 B:HIS365 3.2 72.6 1.0
HE1 B:HIS365 3.2 71.5 1.0
HE1 B:HIS500 3.3 68.2 1.0
HD22 B:ASN240 3.4 78.7 1.0
OP2 G:G1 3.5 61.5 1.0
HE1 B:HIS416 3.6 72.5 1.0
OP3 G:G1 3.7 67.4 1.0
O G:HOH1003 3.7 113.3 1.0
H5' G:G1 3.8 78.1 1.0
HE2 B:HIS416 4.0 77.9 1.0
O5' G:G1 4.0 63.6 1.0
ND1 B:HIS365 4.1 62.5 1.0
ND1 B:HIS500 4.1 59.6 1.0
CG B:HIS500 4.2 55.5 1.0
CG B:HIS365 4.2 63.2 1.0
CB B:ASP361 4.2 62.4 1.0
ND2 B:ASN240 4.2 65.5 1.0
CE1 B:HIS416 4.3 60.4 1.0
C5' G:G1 4.3 65.0 1.0
HB2 B:ASN240 4.4 68.8 1.0
NE2 B:HIS416 4.5 64.8 1.0
ZN B:ZN603 4.5 59.3 1.0
HB2 B:ASP361 4.5 74.4 1.0
HD21 B:ASN240 4.5 78.7 1.0
H5'' G:G1 4.5 78.1 1.0
OD1 B:ASP239 4.6 55.8 1.0
HB3 B:ASP361 4.7 74.4 1.0
HA B:ASP361 4.7 74.3 1.0
O B:ASP361 4.8 62.1 1.0
HD1 B:HIS365 4.9 75.1 1.0
HD1 B:HIS500 4.9 71.6 1.0
CA B:ASP361 4.9 62.3 1.0

Zinc binding site 5 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 5 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn603

b:56.6
occ:1.00
OP3 H:G1 1.9 69.5 1.0
NE2 C:HIS416 2.0 60.7 1.0
OD2 C:ASP415 2.1 51.4 1.0
OD1 C:ASP239 2.1 60.1 1.0
OD2 C:ASP239 2.5 56.5 1.0
CG C:ASP239 2.5 58.9 1.0
CD2 C:HIS416 2.6 55.1 1.0
HD2 C:HIS416 2.6 66.2 1.0
HB2 C:ALA272 2.7 74.5 1.0
CG C:ASP415 2.9 56.9 1.0
CE1 C:HIS416 3.1 59.3 1.0
OD1 C:ASP415 3.1 54.4 1.0
P H:G1 3.3 59.7 1.0
H C:ALA272 3.4 71.9 1.0
HE1 C:HIS416 3.5 71.3 1.0
CB C:ALA272 3.6 62.0 1.0
N C:ALA272 3.8 59.8 1.0
CG C:HIS416 3.8 52.8 1.0
OP2 H:G1 3.8 54.7 1.0
HA C:ALA272 3.8 77.8 1.0
H C:ASN240 4.0 68.5 1.0
CA C:ALA272 4.0 64.7 1.0
ND1 C:HIS416 4.0 54.9 1.0
CB C:ASP239 4.0 61.7 1.0
OD2 C:ASP361 4.1 58.4 1.0
HB3 C:ALA272 4.1 74.5 1.0
O5' H:G1 4.1 56.3 1.0
HB1 C:ALA272 4.2 74.5 1.0
HA C:ALA271 4.2 70.1 1.0
OP1 H:G1 4.2 56.1 1.0
HA C:ASP239 4.2 81.2 1.0
HB2 C:ASN240 4.2 68.5 1.0
HH11 C:ARG276 4.2 66.6 1.0
HD3 C:ARG276 4.3 63.2 1.0
HE1 C:HIS500 4.3 64.9 1.0
HB2 C:ASP361 4.3 71.7 1.0
CB C:ASP415 4.3 55.6 1.0
H5'' H:G1 4.3 70.7 1.0
N C:ASN240 4.3 57.0 1.0
HB2 C:ASP415 4.4 66.8 1.0
HB2 C:ASP239 4.5 74.1 1.0
HB3 C:ASP239 4.5 74.1 1.0
CE1 C:HIS500 4.5 54.0 1.0
CA C:ASP239 4.5 67.6 1.0
C C:ALA271 4.6 56.7 1.0
ZN C:ZN611 4.6 59.4 1.0
CG C:ASP361 4.7 58.4 1.0
C C:ASP239 4.7 65.2 1.0
HB3 C:ASP415 4.8 66.8 1.0
HD1 C:HIS416 4.8 66.0 1.0
C5' H:G1 4.8 58.9 1.0
HB2 C:ARG276 4.9 66.6 1.0
CA C:ALA271 4.9 58.3 1.0
NH1 C:ARG276 4.9 55.5 1.0
HA C:ASN240 4.9 67.9 1.0
NE2 C:HIS500 5.0 54.8 1.0
CB C:ASP361 5.0 59.7 1.0
ND1 C:HIS500 5.0 52.0 1.0

Zinc binding site 6 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 6 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn610

b:166.9
occ:0.53
NE2 D:HIS323 2.2 163.5 1.0
CE1 D:HIS323 3.2 166.7 1.0
CD2 D:HIS323 3.2 160.0 1.0
HE1 D:HIS323 3.3 200.1 1.0
HD2 D:HIS323 3.4 192.0 1.0
HB3 D:ARG321 3.7 80.2 1.0
O D:ARG321 3.9 68.2 1.0
ND1 D:HIS323 4.3 159.2 1.0
CG D:HIS323 4.3 143.9 1.0
HA D:ARG321 4.3 81.8 1.0
C D:ARG321 4.5 71.0 1.0
CB D:ARG321 4.6 66.8 1.0
CA D:ARG321 4.7 68.1 1.0
HG2 D:ARG321 4.8 85.4 1.0

Zinc binding site 7 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 7 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn610

b:166.9
occ:0.47
OE1 C:GLU90 2.0 147.5 1.0
OE2 C:GLU90 2.3 138.9 1.0
CD C:GLU90 2.5 144.7 1.0
NE2 C:HIS92 2.6 64.4 1.0
HD2 C:HIS92 3.4 63.8 1.0
CD2 C:HIS92 3.4 53.1 1.0
CE1 C:HIS92 3.7 58.2 1.0
HE1 C:HIS92 4.0 69.9 1.0
CG C:GLU90 4.0 157.1 1.0
HD11 C:ILE93 4.2 70.9 1.0
HB3 C:GLU90 4.4 174.0 1.0
O C:HOH810 4.4 116.6 1.0
HG3 C:GLU90 4.4 188.7 1.0
HG2 C:GLU90 4.4 188.7 1.0
HG12 C:ILE93 4.5 76.1 1.0
CG C:HIS92 4.6 60.8 1.0
CB C:GLU90 4.7 144.9 1.0
ND1 C:HIS92 4.8 61.9 1.0
HB2 C:GLU90 4.8 174.0 1.0
O C:HOH733 4.8 72.1 1.0

Zinc binding site 8 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 8 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn611

b:59.4
occ:1.00
OP1 H:G1 1.7 56.1 1.0
OD2 C:ASP361 1.8 58.4 1.0
NE2 C:HIS500 1.8 54.8 1.0
NE2 C:HIS365 1.9 59.4 1.0
CE1 C:HIS500 2.6 54.0 1.0
HE1 C:HIS500 2.7 64.9 1.0
CG C:ASP361 2.7 58.4 1.0
CE1 C:HIS365 2.7 59.8 1.0
HE1 C:HIS365 2.8 71.3 1.0
P H:G1 3.0 59.7 1.0
CD2 C:HIS500 3.0 55.7 1.0
OD1 C:ASP361 3.0 58.6 1.0
CD2 C:HIS365 3.1 59.6 1.0
OP3 H:G1 3.3 69.5 1.0
HD2 C:HIS365 3.4 71.1 1.0
HD2 C:HIS500 3.4 67.0 1.0
HD22 C:ASN240 3.6 72.9 1.0
HE1 C:HIS416 3.6 71.3 1.0
ND1 C:HIS500 3.8 52.0 1.0
H5' H:G1 3.8 70.7 1.0
OP2 H:G1 3.9 54.7 1.0
ND1 C:HIS365 3.9 63.0 1.0
CG C:HIS500 4.0 54.2 1.0
CG C:HIS365 4.1 60.1 1.0
O5' H:G1 4.1 56.3 1.0
CB C:ASP361 4.1 59.7 1.0
ND2 C:ASN240 4.2 60.7 1.0
CE1 C:HIS416 4.2 59.3 1.0
HB2 C:ASP361 4.3 71.7 1.0
C5' H:G1 4.3 58.9 1.0
HD21 C:ASN240 4.3 72.9 1.0
H5'' H:G1 4.3 70.7 1.0
NE2 C:HIS416 4.4 60.7 1.0
HD1 C:HIS500 4.5 62.5 1.0
O C:ASP361 4.6 60.3 1.0
ZN C:ZN603 4.6 56.6 1.0
HD1 C:HIS365 4.6 75.7 1.0
HB2 C:ASN240 4.6 68.5 1.0
HA C:ASP361 4.6 70.0 1.0
OD1 C:ASP239 4.7 60.1 1.0
HB3 C:ASP361 4.7 71.7 1.0
CA C:ASP361 4.9 58.3 1.0
O C:HOH744 5.0 59.0 1.0
O C:HOH707 5.0 54.8 1.0

Zinc binding site 9 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 9 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn603

b:60.1
occ:1.00
OP2 F:G1 1.9 62.8 1.0
OD2 D:ASP415 2.0 58.7 1.0
NE2 D:HIS416 2.1 66.0 1.0
OD1 D:ASP239 2.1 59.1 1.0
OD2 D:ASP239 2.3 57.1 1.0
CG D:ASP239 2.5 56.1 1.0
HB2 D:ALA272 2.6 70.6 1.0
CG D:ASP415 2.9 55.8 1.0
CE1 D:HIS416 2.9 66.4 1.0
CD2 D:HIS416 2.9 63.3 1.0
OD1 D:ASP415 3.1 52.8 1.0
HE1 D:HIS416 3.1 79.8 1.0
HD2 D:HIS416 3.2 76.0 1.0
P F:G1 3.3 62.5 1.0
H D:ALA272 3.3 76.2 1.0
CB D:ALA272 3.6 58.8 1.0
N D:ALA272 3.8 63.4 1.0
H D:ASN240 3.9 64.2 1.0
ND1 D:HIS416 3.9 58.9 1.0
HA D:ALA272 3.9 71.2 1.0
H5'' F:G1 3.9 81.7 1.0
CG D:HIS416 3.9 63.4 1.0
HB2 D:ASN240 3.9 64.7 1.0
CB D:ASP239 4.0 50.8 1.0
CA D:ALA272 4.0 59.2 1.0
HB3 D:ALA272 4.0 70.6 1.0
OP3 F:G1 4.1 61.2 1.0
OP1 F:G1 4.1 60.3 1.0
HB1 D:ALA272 4.1 70.6 1.0
O5' F:G1 4.2 59.7 1.0
OD1 D:ASP361 4.2 52.6 1.0
HA D:ASP239 4.2 70.5 1.0
CB D:ASP415 4.3 53.4 1.0
N D:ASN240 4.3 53.5 1.0
HD3 D:ARG276 4.3 72.3 1.0
HE1 D:HIS500 4.3 73.0 1.0
HA D:ALA271 4.3 72.0 1.0
HB2 D:ASP361 4.3 62.0 1.0
HB2 D:ASP415 4.4 64.2 1.0
CG D:ASP361 4.4 52.9 1.0
HB2 D:ASP239 4.4 61.1 1.0
ZN D:ZN608 4.5 59.2 1.0
HB3 D:ASP239 4.5 61.1 1.0
CE1 D:HIS500 4.5 60.7 1.0
C5' F:G1 4.5 68.0 1.0
HH11 D:ARG276 4.5 80.8 1.0
CA D:ASP239 4.6 58.7 1.0
HD1 D:HIS416 4.6 70.8 1.0
C D:ALA271 4.7 56.9 1.0
HB3 D:ASP415 4.7 64.2 1.0
OD2 D:ASP361 4.7 54.9 1.0
NE2 D:HIS500 4.7 59.8 1.0
C D:ASP239 4.8 53.6 1.0
H5' F:G1 4.8 81.7 1.0
CB D:ASN240 4.8 53.8 1.0
HB2 D:ARG276 4.8 74.6 1.0
HA D:ASN240 4.9 64.8 1.0
CB D:ASP361 4.9 52.0 1.0
CA D:ASN240 4.9 53.9 1.0
H D:HIS416 5.0 69.2 1.0

Zinc binding site 10 out of 10 in 7pvk

Go back to Zinc Binding Sites List in 7pvk
Zinc binding site 10 out of 10 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn608

b:59.2
occ:1.00
OP1 F:G1 1.7 60.3 1.0
NE2 D:HIS500 1.9 59.8 1.0
NE2 D:HIS365 2.0 72.1 1.0
OD1 D:ASP361 2.0 52.6 1.0
CG D:ASP361 2.7 52.9 1.0
CE1 D:HIS500 2.8 60.7 1.0
OD2 D:ASP361 2.8 54.9 1.0
CE1 D:HIS365 2.8 74.1 1.0
HE1 D:HIS365 2.9 89.0 1.0
HE1 D:HIS500 2.9 73.0 1.0
P F:G1 3.0 62.5 1.0
CD2 D:HIS500 3.0 61.3 1.0
CD2 D:HIS365 3.1 73.2 1.0
HD2 D:HIS500 3.3 73.6 1.0
HD2 D:HIS365 3.4 87.9 1.0
HD22 D:ASN240 3.4 79.5 1.0
OP2 F:G1 3.5 62.8 1.0
HE1 D:HIS416 3.6 79.8 1.0
OP3 F:G1 3.8 61.2 1.0
O F:HOH1002 3.8 88.3 1.0
H5' F:G1 3.9 81.7 1.0
ND1 D:HIS500 3.9 60.8 1.0
ND1 D:HIS365 4.0 75.2 1.0
CG D:HIS500 4.1 59.4 1.0
O5' F:G1 4.1 59.7 1.0
CG D:HIS365 4.1 71.6 1.0
ND2 D:ASN240 4.2 66.2 1.0
CE1 D:HIS416 4.2 66.4 1.0
CB D:ASP361 4.2 52.0 1.0
NE2 D:HIS416 4.4 66.0 1.0
C5' F:G1 4.4 68.0 1.0
HD21 D:ASN240 4.4 79.5 1.0
ZN D:ZN603 4.5 60.1 1.0
HB2 D:ASN240 4.5 64.7 1.0
HB2 D:ASP361 4.5 62.0 1.0
H5'' F:G1 4.6 81.7 1.0
OD1 D:ASP239 4.6 59.1 1.0
HA D:ASP361 4.7 71.4 1.0
HD1 D:HIS500 4.7 73.0 1.0
HD1 D:HIS365 4.7 90.3 1.0
HB3 D:ASP361 4.8 62.0 1.0
O D:ASP361 4.8 57.8 1.0
O D:HOH759 4.9 64.0 1.0
CA D:ASP361 4.9 59.4 1.0

Reference:

C.Schmitz, M.Madej, Z.Nowakowska, A.Cuppari, A.Jacula, M.Ksiazek, K.Mikruta, J.Wisniewski, N.Pudelko-Malik, A.Saran, N.Zeytuni, P.Mlynarz, R.J.Lamont, I.Uson, V.Siksnys, J.Potempa, M.Sola. Response Regulator Porx Coordinates Oligonucleotide Signalling and Gene Expression to Control the Secretion of Virulence Factors. Nucleic Acids Res. V. 50 12558 2022.
ISSN: ESSN 1362-4962
PubMed: 36464236
DOI: 10.1093/NAR/GKAC1103
Page generated: Sat Apr 8 01:40:27 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy