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Zinc in PDB 7pgr: The Structure of Human Neurofibromin Isoform 2 in Closed Conformation

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of Human Neurofibromin Isoform 2 in Closed Conformation (pdb code 7pgr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of Human Neurofibromin Isoform 2 in Closed Conformation, PDB code: 7pgr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7pgr

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Zinc binding site 1 out of 2 in the The Structure of Human Neurofibromin Isoform 2 in Closed Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Human Neurofibromin Isoform 2 in Closed Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn2901

b:207.6
occ:1.00
SG N:CYS1032 2.0 119.3 1.0
NE2 N:HIS1558 2.0 127.5 1.0
NE2 N:HIS1576 2.0 124.8 1.0
CD2 N:HIS1576 2.7 124.8 1.0
CE1 N:HIS1558 3.0 127.5 1.0
CD2 N:HIS1558 3.1 127.5 1.0
HE1 N:HIS1558 3.2 127.5 1.0
CE1 N:HIS1576 3.2 124.8 1.0
HD2 N:HIS1558 3.3 127.5 1.0
CB N:CYS1032 3.4 119.3 1.0
HA N:CYS1032 3.5 119.3 1.0
HB3 N:CYS1032 3.6 119.3 1.0
CG N:HIS1576 4.0 124.8 1.0
CA N:CYS1032 4.0 119.3 1.0
ND1 N:HIS1558 4.1 127.5 1.0
ND1 N:HIS1576 4.2 124.8 1.0
CG N:HIS1558 4.2 127.5 1.0
HB2 N:CYS1032 4.2 119.3 1.0
HZ N:PHE1572 4.4 122.6 1.0
HZ1 N:LYS1581 4.4 128.4 1.0
HG N:SER987 4.6 112.1 1.0
HE3 N:LYS1581 4.6 128.4 1.0
N N:CYS1032 4.8 119.3 1.0
HZ2 N:LYS1581 4.8 128.4 1.0
HD1 N:HIS1558 4.9 127.5 1.0
H N:CYS1032 4.9 119.3 1.0
HE2 N:PHE1572 5.0 122.6 1.0

Zinc binding site 2 out of 2 in 7pgr

Go back to Zinc Binding Sites List in 7pgr
Zinc binding site 2 out of 2 in the The Structure of Human Neurofibromin Isoform 2 in Closed Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of Human Neurofibromin Isoform 2 in Closed Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn2901

b:166.8
occ:1.00
SG F:CYS1032 2.0 102.9 1.0
NE2 F:HIS1576 2.0 113.7 1.0
NE2 F:HIS1558 2.0 116.0 1.0
CD2 F:HIS1576 2.7 113.7 1.0
CE1 F:HIS1558 3.0 116.0 1.0
CD2 F:HIS1558 3.0 116.0 1.0
HE1 F:HIS1558 3.2 116.0 1.0
CE1 F:HIS1576 3.2 113.7 1.0
HD2 F:HIS1558 3.2 116.0 1.0
CB F:CYS1032 3.4 102.9 1.0
HA F:CYS1032 3.4 102.9 1.0
HB3 F:CYS1032 3.6 102.9 1.0
CA F:CYS1032 4.0 102.9 1.0
CG F:HIS1576 4.0 113.7 1.0
ND1 F:HIS1558 4.1 116.0 1.0
ND1 F:HIS1576 4.2 113.7 1.0
CG F:HIS1558 4.2 116.0 1.0
HB2 F:CYS1032 4.2 102.9 1.0
HZ F:PHE1572 4.4 109.8 1.0
HZ1 F:LYS1581 4.5 114.5 1.0
HG F:SER987 4.6 102.1 1.0
HE3 F:LYS1581 4.7 114.5 1.0
N F:CYS1032 4.7 102.9 1.0
HZ2 F:LYS1581 4.9 114.5 1.0
HD1 F:HIS1558 4.9 116.0 1.0
H F:CYS1032 4.9 102.9 1.0
HE2 F:PHE1572 5.0 109.8 1.0

Reference:

A.Naschberger, R.Baradaran, B.Rupp, M.Carroni. The Structure of Neurofibromin Isoform 2 Reveals Different Functional States. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34707296
DOI: 10.1038/S41586-021-04024-X
Page generated: Thu Nov 25 10:57:30 2021

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