Zinc in PDB 7pel: Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma (pdb code 7pel). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma, PDB code: 7pel:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7pel

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Zinc binding site 1 out of 4 in the Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1000

b:53.0
occ:1.00
ND1 A:HIS12 2.0 28.7 1.0
NE2 A:HIS8 2.0 29.6 1.0
CE1 A:HIS12 2.1 28.7 1.0
SG A:CYS35 2.3 51.5 1.0
SG A:CYS38 2.3 52.1 1.0
CD2 A:HIS8 2.7 29.6 1.0
CE1 A:HIS8 3.0 29.6 1.0
CB A:CYS35 3.2 51.5 1.0
CG A:HIS12 3.2 28.7 1.0
NE2 A:HIS12 3.3 28.7 1.0
CD2 A:HIS12 3.8 28.7 1.0
CG A:HIS8 3.8 29.6 1.0
ND1 A:HIS8 3.9 29.6 1.0
CB A:CYS38 4.0 52.1 1.0
CB A:HIS12 4.2 28.7 1.0
O A:HIS8 4.3 29.6 1.0
CA A:HIS12 4.4 28.7 1.0
CA A:CYS35 4.6 51.5 1.0
N A:CYS38 4.7 52.1 1.0
CA A:CYS38 4.9 52.1 1.0
C A:HIS8 4.9 29.6 1.0

Zinc binding site 2 out of 4 in 7pel

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Zinc binding site 2 out of 4 in the Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1000

b:23.8
occ:1.00
NE2 B:HIS8 2.0 5.9 1.0
ND1 B:HIS12 2.0 4.2 1.0
SG B:CYS38 2.3 6.8 1.0
SG B:CYS35 2.3 12.5 1.0
CE1 B:HIS12 2.6 4.2 1.0
CE1 B:HIS8 2.9 5.9 1.0
CD2 B:HIS8 3.0 5.9 1.0
CG B:HIS12 3.3 4.2 1.0
CB B:CYS35 3.3 12.5 1.0
CB B:CYS38 3.5 6.8 1.0
NE2 B:HIS12 3.9 4.2 1.0
ND1 B:HIS8 4.0 5.9 1.0
CB B:HIS12 4.0 4.2 1.0
CG B:HIS8 4.0 5.9 1.0
CD2 B:HIS12 4.2 4.2 1.0
N B:CYS38 4.2 6.8 1.0
CA B:HIS12 4.3 4.2 1.0
CA B:CYS38 4.5 6.8 1.0
O B:HIS8 4.7 5.9 1.0
CA B:CYS35 4.8 12.5 1.0

Zinc binding site 3 out of 4 in 7pel

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Zinc binding site 3 out of 4 in the Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1000

b:53.5
occ:1.00
ND1 D:HIS12 2.0 29.0 1.0
NE2 D:HIS8 2.0 30.1 1.0
CE1 D:HIS12 2.1 29.0 1.0
SG D:CYS35 2.3 52.4 1.0
SG D:CYS38 2.3 52.0 1.0
CD2 D:HIS8 2.7 30.1 1.0
CE1 D:HIS8 3.0 30.1 1.0
CB D:CYS35 3.2 52.4 1.0
CG D:HIS12 3.2 29.0 1.0
NE2 D:HIS12 3.3 29.0 1.0
CD2 D:HIS12 3.8 29.0 1.0
CG D:HIS8 3.8 30.1 1.0
ND1 D:HIS8 3.9 30.1 1.0
CB D:CYS38 4.0 52.0 1.0
CB D:HIS12 4.2 29.0 1.0
O D:HIS8 4.3 30.1 1.0
CA D:HIS12 4.4 29.0 1.0
CA D:CYS35 4.6 52.4 1.0
N D:CYS38 4.7 52.0 1.0
CA D:CYS38 4.9 52.0 1.0
C D:HIS8 4.9 30.1 1.0

Zinc binding site 4 out of 4 in 7pel

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Zinc binding site 4 out of 4 in the Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryoem Structure of Simian T-Cell Lymphotropic Virus Intasome in Complex with PP2A Regulatory Subunit B56 Gamma within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1000

b:24.0
occ:1.00
NE2 E:HIS8 2.0 5.8 1.0
ND1 E:HIS12 2.0 4.0 1.0
SG E:CYS38 2.3 7.0 1.0
SG E:CYS35 2.3 12.7 1.0
CE1 E:HIS12 2.6 4.0 1.0
CE1 E:HIS8 2.9 5.8 1.0
CD2 E:HIS8 3.0 5.8 1.0
CG E:HIS12 3.3 4.0 1.0
CB E:CYS35 3.3 12.7 1.0
CB E:CYS38 3.5 7.0 1.0
NE2 E:HIS12 3.9 4.0 1.0
ND1 E:HIS8 4.0 5.8 1.0
CB E:HIS12 4.0 4.0 1.0
CG E:HIS8 4.0 5.8 1.0
CD2 E:HIS12 4.2 4.0 1.0
N E:CYS38 4.2 7.0 1.0
CA E:HIS12 4.3 4.0 1.0
CA E:CYS38 4.5 7.0 1.0
O E:HIS8 4.7 5.8 1.0
CA E:CYS35 4.8 12.7 1.0

Reference:

M.S.Barski, J.J.Minnell, Z.Hodakova, V.E.Pye, A.Nans, P.Cherepanov, G.N.Maertens. Cryo-Em Structure of the Deltaretroviral Intasome in Complex with the PP2A Regulatory Subunit B56GAMMA. Nat Commun V. 11 5043 2020.
ISSN: ESSN 2041-1723
PubMed: 33028863
DOI: 10.1038/S41467-020-18874-Y
Page generated: Fri Sep 24 17:12:00 2021

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