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Zinc in PDB 7p37: Streptomyces Coelicolor Atp-Loaded Nrdr

Zinc Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Streptomyces Coelicolor Atp-Loaded Nrdr (pdb code 7p37). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Streptomyces Coelicolor Atp-Loaded Nrdr, PDB code: 7p37:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 7p37

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Zinc binding site 1 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:69.4
occ:1.00
 SG A:CYS31 2.3 41.5 1.0
SG A:CYS6 2.3 45.0 1.0
SG A:CYS34 2.3 44.0 1.0
SG A:CYS3 2.3 41.2 1.0
CB A:CYS31 2.9 41.5 1.0
CB A:CYS3 2.9 41.2 1.0
CB A:CYS6 3.7 45.0 1.0
CB A:CYS34 3.7 44.0 1.0
N A:CYS6 4.2 45.0 1.0
N A:CYS34 4.2 44.0 1.0
CA A:CYS31 4.4 41.5 1.0
CB A:HIS8 4.4 46.8 1.0
CA A:CYS6 4.4 45.0 1.0
CA A:CYS3 4.4 41.2 1.0
CA A:CYS34 4.5 44.0 1.0
C A:CYS6 4.9 45.0 1.0
N A:HIS8 4.9 46.8 1.0
C A:CYS31 5.0 41.5 1.0

Zinc binding site 2 out of 12 in 7p37

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Zinc binding site 2 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn203

b:66.0
occ:1.00
 SG E:CYS31 2.3 41.5 1.0
SG E:CYS6 2.3 45.0 1.0
SG E:CYS34 2.3 44.0 1.0
SG E:CYS3 2.3 41.2 1.0
CB E:CYS31 2.9 41.5 1.0
CB E:CYS3 2.9 41.2 1.0
CB E:CYS6 3.7 45.0 1.0
CB E:CYS34 3.7 44.0 1.0
N E:CYS6 4.2 45.0 1.0
N E:CYS34 4.2 44.0 1.0
CA E:CYS31 4.4 41.5 1.0
CB E:HIS8 4.4 46.8 1.0
CA E:CYS6 4.4 45.0 1.0
CA E:CYS3 4.4 41.2 1.0
CA E:CYS34 4.5 44.0 1.0
C E:CYS6 4.9 45.0 1.0
N E:HIS8 4.9 46.8 1.0
C E:CYS31 5.0 41.5 1.0

Zinc binding site 3 out of 12 in 7p37

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Zinc binding site 3 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn203

b:66.5
occ:1.00
 SG I:CYS31 2.3 41.5 1.0
SG I:CYS6 2.3 45.0 1.0
SG I:CYS34 2.3 44.0 1.0
SG I:CYS3 2.3 41.2 1.0
CB I:CYS31 2.9 41.5 1.0
CB I:CYS3 2.9 41.2 1.0
CB I:CYS6 3.7 45.0 1.0
CB I:CYS34 3.7 44.0 1.0
N I:CYS6 4.2 45.0 1.0
N I:CYS34 4.2 44.0 1.0
CA I:CYS31 4.4 41.5 1.0
CB I:HIS8 4.4 46.8 1.0
CA I:CYS6 4.4 45.0 1.0
CA I:CYS3 4.4 41.2 1.0
CA I:CYS34 4.5 44.0 1.0
C I:CYS6 4.9 45.0 1.0
N I:HIS8 4.9 46.8 1.0
C I:CYS31 5.0 41.5 1.0

Zinc binding site 4 out of 12 in 7p37

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Zinc binding site 4 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn203

b:68.7
occ:1.00
 SG C:CYS31 2.3 41.5 1.0
SG C:CYS6 2.3 45.0 1.0
SG C:CYS34 2.3 44.0 1.0
SG C:CYS3 2.3 41.2 1.0
CB C:CYS31 2.9 41.5 1.0
CB C:CYS3 2.9 41.2 1.0
CB C:CYS6 3.7 45.0 1.0
CB C:CYS34 3.7 44.0 1.0
N C:CYS6 4.2 45.0 1.0
N C:CYS34 4.2 44.0 1.0
CA C:CYS31 4.4 41.5 1.0
CB C:HIS8 4.4 46.8 1.0
CA C:CYS6 4.4 45.0 1.0
CA C:CYS3 4.4 41.2 1.0
CA C:CYS34 4.5 44.0 1.0
C C:CYS6 4.9 45.0 1.0
N C:HIS8 4.9 46.8 1.0
C C:CYS31 5.0 41.5 1.0

Zinc binding site 5 out of 12 in 7p37

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Zinc binding site 5 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn203

b:63.1
occ:1.00
 SG G:CYS31 2.3 41.5 1.0
SG G:CYS6 2.3 45.0 1.0
SG G:CYS34 2.3 44.0 1.0
SG G:CYS3 2.3 41.2 1.0
CB G:CYS31 2.9 41.5 1.0
CB G:CYS3 2.9 41.2 1.0
CB G:CYS6 3.7 45.0 1.0
CB G:CYS34 3.7 44.0 1.0
N G:CYS6 4.2 45.0 1.0
N G:CYS34 4.2 44.0 1.0
CA G:CYS31 4.4 41.5 1.0
CB G:HIS8 4.4 46.8 1.0
CA G:CYS6 4.4 45.0 1.0
CA G:CYS3 4.4 41.2 1.0
CA G:CYS34 4.5 44.0 1.0
C G:CYS6 4.9 45.0 1.0
N G:HIS8 4.9 46.8 1.0
C G:CYS31 5.0 41.5 1.0

Zinc binding site 6 out of 12 in 7p37

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Zinc binding site 6 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn203

b:68.9
occ:1.00
 SG K:CYS31 2.3 41.5 1.0
SG K:CYS6 2.3 45.0 1.0
SG K:CYS34 2.3 44.0 1.0
SG K:CYS3 2.3 41.2 1.0
CB K:CYS31 2.9 41.5 1.0
CB K:CYS3 2.9 41.2 1.0
CB K:CYS6 3.7 45.0 1.0
CB K:CYS34 3.7 44.0 1.0
N K:CYS6 4.2 45.0 1.0
N K:CYS34 4.2 44.0 1.0
CA K:CYS31 4.4 41.5 1.0
CB K:HIS8 4.4 46.8 1.0
CA K:CYS6 4.4 45.0 1.0
CA K:CYS3 4.4 41.2 1.0
CA K:CYS34 4.5 44.0 1.0
C K:CYS6 4.9 45.0 1.0
N K:HIS8 4.9 46.8 1.0
C K:CYS31 5.0 41.5 1.0

Zinc binding site 7 out of 12 in 7p37

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Zinc binding site 7 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn203

b:31.5
occ:1.00
 SG B:CYS31 2.3 13.4 1.0
SG B:CYS6 2.3 12.2 1.0
SG B:CYS34 2.3 13.8 1.0
SG B:CYS3 2.3 11.8 1.0
CB B:CYS31 2.9 13.4 1.0
CB B:CYS3 3.1 11.8 1.0
CB B:CYS34 3.5 13.8 1.0
CB B:CYS6 3.8 12.2 1.0
N B:CYS34 4.0 13.8 1.0
N B:CYS6 4.0 12.2 1.0
CA B:CYS34 4.3 13.8 1.0
CA B:CYS31 4.4 13.4 1.0
CA B:CYS6 4.4 12.2 1.0
CB B:HIS8 4.5 12.7 1.0
CA B:CYS3 4.5 11.8 1.0
CB B:PHE5 4.7 12.2 1.0
CD2 B:PHE5 4.7 12.2 1.0
CB B:ASP33 4.8 13.5 1.0
C B:CYS6 4.9 12.2 1.0
N B:HIS8 4.9 12.7 1.0
C B:CYS31 5.0 13.4 1.0
N B:ARG7 5.0 12.7 1.0

Zinc binding site 8 out of 12 in 7p37

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Zinc binding site 8 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn203

b:30.0
occ:1.00
 SG F:CYS6 2.3 12.2 1.0
SG F:CYS34 2.3 13.8 1.0
SG F:CYS31 2.3 13.4 1.0
SG F:CYS3 2.3 11.8 1.0
CB F:CYS31 2.9 13.4 1.0
CB F:CYS3 3.1 11.8 1.0
CB F:CYS34 3.5 13.8 1.0
CB F:CYS6 3.8 12.2 1.0
N F:CYS34 4.0 13.8 1.0
N F:CYS6 4.0 12.2 1.0
CA F:CYS34 4.3 13.8 1.0
CA F:CYS31 4.4 13.4 1.0
CA F:CYS6 4.4 12.2 1.0
CB F:HIS8 4.5 12.7 1.0
CA F:CYS3 4.5 11.8 1.0
CB F:PHE5 4.7 12.2 1.0
CD2 F:PHE5 4.7 12.2 1.0
CB F:ASP33 4.8 13.5 1.0
C F:CYS6 4.9 12.2 1.0
N F:HIS8 4.9 12.7 1.0
C F:CYS31 5.0 13.4 1.0
N F:ARG7 5.0 12.7 1.0

Zinc binding site 9 out of 12 in 7p37

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Zinc binding site 9 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn203

b:26.8
occ:1.00
 SG J:CYS6 2.3 12.2 1.0
SG J:CYS34 2.3 13.8 1.0
SG J:CYS31 2.3 13.4 1.0
SG J:CYS3 2.3 11.8 1.0
CB J:CYS31 2.9 13.4 1.0
CB J:CYS3 3.1 11.8 1.0
CB J:CYS34 3.5 13.8 1.0
CB J:CYS6 3.8 12.2 1.0
N J:CYS34 4.0 13.8 1.0
N J:CYS6 4.0 12.2 1.0
CA J:CYS34 4.3 13.8 1.0
CA J:CYS31 4.4 13.4 1.0
CA J:CYS6 4.4 12.2 1.0
CB J:HIS8 4.5 12.7 1.0
CA J:CYS3 4.5 11.8 1.0
CB J:PHE5 4.7 12.2 1.0
CD2 J:PHE5 4.7 12.2 1.0
CB J:ASP33 4.8 13.5 1.0
C J:CYS6 4.9 12.2 1.0
N J:HIS8 4.9 12.7 1.0
C J:CYS31 5.0 13.4 1.0
N J:ARG7 5.0 12.7 1.0

Zinc binding site 10 out of 12 in 7p37

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Zinc binding site 10 out of 12 in the Streptomyces Coelicolor Atp-Loaded Nrdr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Streptomyces Coelicolor Atp-Loaded Nrdr within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn203

b:31.1
occ:1.00
 SG D:CYS6 2.3 12.2 1.0
SG D:CYS31 2.3 13.4 1.0
SG D:CYS34 2.3 13.8 1.0
SG D:CYS3 2.3 11.8 1.0
CB D:CYS31 2.9 13.4 1.0
CB D:CYS3 3.1 11.8 1.0
CB D:CYS34 3.5 13.8 1.0
CB D:CYS6 3.8 12.2 1.0
N D:CYS34 4.0 13.8 1.0
N D:CYS6 4.0 12.2 1.0
CA D:CYS34 4.3 13.8 1.0
CA D:CYS31 4.4 13.4 1.0
CA D:CYS6 4.4 12.2 1.0
CB D:HIS8 4.5 12.7 1.0
CA D:CYS3 4.5 11.8 1.0
CB D:PHE5 4.7 12.2 1.0
CD2 D:PHE5 4.7 12.2 1.0
CB D:ASP33 4.8 13.5 1.0
C D:CYS6 4.9 12.2 1.0
N D:HIS8 4.9 12.7 1.0
C D:CYS31 5.0 13.4 1.0
N D:ARG7 5.0 12.7 1.0

Reference:

I.Rozman Grinberg, M.Martinez-Carranza, O.Bimai, G.Nouairia, S.Shahid, D.Lundin, D.T.Logan, B.M.Sjoberg, P.Stenmark. A Nucleotide-Sensing Oligomerization Mechanism That Controls Nrdr-Dependent Transcription of Ribonucleotide Reductases. Nat Commun V. 13 2700 2022.
ISSN: ESSN 2041-1723
PubMed: 35577776
DOI: 10.1038/S41467-022-30328-1
Page generated: Wed Oct 30 08:59:53 2024

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