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Zinc in PDB 7oik: Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized

Enzymatic activity of Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized

All present enzymatic activity of Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized:
2.3.2.23; 2.3.2.27;

Other elements in 7oik:

The structure of Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized (pdb code 7oik). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized, PDB code: 7oik:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7oik

Go back to Zinc Binding Sites List in 7oik
Zinc binding site 1 out of 2 in the Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn5203

b:523.7
occ:1.00
CE1 A:HIS3964 1.6 466.1 1.0
ND1 A:HIS3964 2.1 466.1 1.0
SG A:CYS3985 2.3 513.5 1.0
SG A:CYS3962 2.3 485.8 1.0
SG A:CYS3982 2.3 504.0 1.0
NE2 A:HIS3964 2.7 466.1 1.0
CG A:HIS3964 3.2 466.1 1.0
CB A:CYS3982 3.4 504.0 1.0
CD2 A:HIS3964 3.4 466.1 1.0
CB A:CYS3962 3.5 485.8 1.0
CB A:CYS3985 3.6 513.5 1.0
N A:CYS3985 3.7 513.5 1.0
CA A:CYS3985 4.1 513.5 1.0
CD2 A:LEU3960 4.3 451.6 1.0
CB A:HIS3964 4.3 466.1 1.0
O A:CYS3962 4.4 485.8 1.0
OG1 A:THR3987 4.5 514.0 1.0
CB A:THR3987 4.5 514.0 1.0
CB A:TYR3984 4.5 496.0 1.0
C A:CYS3985 4.6 513.5 1.0
CA A:CYS3962 4.8 485.8 1.0
N A:LEU3986 4.8 511.7 1.0
C A:TYR3984 4.8 496.0 1.0
C A:CYS3962 4.8 485.8 1.0
N A:THR3987 4.9 514.0 1.0
CA A:CYS3982 4.9 504.0 1.0
N A:TYR3984 4.9 496.0 1.0
CA A:TYR3984 5.0 496.0 1.0
CD2 A:TYR3984 5.0 496.0 1.0

Zinc binding site 2 out of 2 in 7oik

Go back to Zinc Binding Sites List in 7oik
Zinc binding site 2 out of 2 in the Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mouse RNF213:UBE2L3 Transthiolation Intermediate, Chemically Stabilized within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn5204

b:442.3
occ:1.00
SG A:CYS3967 2.3 428.9 1.0
SG A:CYS3950 2.3 385.0 1.0
SG A:CYS3970 2.3 452.4 1.0
SG A:CYS3947 2.3 394.6 1.0
CB A:CYS3947 2.7 394.6 1.0
CB A:CYS3967 3.0 428.9 1.0
CB A:CYS3950 3.1 385.0 1.0
CB A:CYS3970 3.4 452.4 1.0
N A:CYS3950 3.6 385.0 1.0
N A:CYS3967 3.9 428.9 1.0
CA A:CYS3950 4.0 385.0 1.0
CA A:CYS3967 4.0 428.9 1.0
CA A:CYS3947 4.2 394.6 1.0
CB A:ILE3949 4.6 396.1 1.0
C A:CYS3947 4.6 394.6 1.0
CA A:CYS3970 4.7 452.4 1.0
O A:GLY3952 4.7 363.9 1.0
C A:ILE3949 4.8 396.1 1.0
O A:CYS3947 4.8 394.6 1.0
N A:ILE3949 4.9 396.1 1.0
N A:CYS3947 4.9 394.6 1.0
C A:CYS3950 4.9 385.0 1.0
NH2 A:ARG3969 4.9 448.1 1.0
N A:CYS3970 5.0 452.4 1.0
CA A:ILE3949 5.0 396.1 1.0

Reference:

J.Ahel, A.J.Fletcher, D.Grabarczyk, E.Roitinger, L.Deszcz, A.Lehner, S.Virdee, T.Clausen. E3 Ubiquitin Ligase RNF213 Employs A Non-Canonical Zinc Finger Active Site and Is Allosterically Regulated By Atp To Be Published.
Page generated: Sat Apr 8 01:09:53 2023

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