Zinc in PDB 7nar: Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)

The structure of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) also contains other interesting chemical elements:

Magnesium

(Mg)

97 atoms

The binding sites of Zinc atom in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) (pdb code 7nar). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement), PDB code: 7nar:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:140.6 occ:1.00 NE2 B:HIS18 2.1 117.0 1.0 OD1 B:ASP204 2.2 101.4 1.0 OD2 B:ASP204 2.4 92.2 1.0 CG B:ASP204 2.6 97.0 1.0 OD2 B:ASP188 2.7 94.9 1.0 CD2 B:HIS18 3.1 116.4 1.0 CE1 B:HIS18 3.1 116.5 1.0 CB B:ASP188 3.1 92.1 1.0 CG B:ASP188 3.3 94.1 1.0 OD1 B:ASN190 3.6 114.2 1.0 OD1 B:ASP205 3.6 102.8 1.0 OD1 B:ASP165 3.8 94.6 1.0 OD2 B:ASP205 4.1 103.8 1.0 CG B:ASP165 4.1 93.5 1.0 CB B:ASP204 4.1 94.1 1.0 ND1 B:HIS18 4.2 116.3 1.0 CG B:ASP205 4.2 100.7 1.0 CG B:HIS18 4.2 115.9 1.0 OD2 B:ASP165 4.3 92.6 1.0 CG B:ASN190 4.3 114.4 1.0 OD1 B:ASP188 4.5 94.0 1.0 ND2 B:ASN190 4.5 114.5 1.0 CA B:ASP188 4.6 92.8 1.0 N B:ASP204 4.7 101.4 1.0 CA B:ASP204 4.9 95.0 1.0 CB B:ASP165 4.9 98.0 1.0

Zinc binding site 2 out of 2 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ W:Zn401 b:156.7 occ:1.00 ND1 W:HIS304 2.2 140.0 1.0 SG W:CYS297 2.4 138.4 1.0 SG W:CYS310 2.4 143.6 1.0 CB W:CYS310 2.4 143.6 1.0 SG W:CYS302 2.4 139.9 1.0 CA W:CYS310 2.5 143.6 1.0 CE1 W:HIS304 3.1 140.0 1.0 C W:CYS310 3.1 143.6 1.0 N W:ALA311 3.2 138.9 1.0 CG W:HIS304 3.2 140.0 1.0 CB W:CYS297 3.5 138.4 1.0 CB W:HIS304 3.6 140.0 1.0 CA W:HIS304 3.6 140.0 1.0 CB W:CYS302 3.8 139.9 1.0 N W:CYS310 3.8 143.6 1.0 O W:CYS310 4.0 143.6 1.0 NE2 W:HIS304 4.2 140.0 1.0 N W:ILE312 4.2 137.2 1.0 CD2 W:HIS304 4.3 140.0 1.0 N W:HIS304 4.3 140.0 1.0 O W:GLY309 4.4 142.1 1.0 CA W:ALA311 4.5 138.9 1.0 C W:GLY309 4.6 142.1 1.0 C W:HIS304 4.7 140.0 1.0 CA W:CYS297 4.7 138.4 1.0 C W:ALA311 4.8 138.9 1.0 O W:HIS304 4.8 140.0 1.0 O W:CYS302 5.0 139.9 1.0

A.Schedlbauer, I.Iturrioz, B.Ochoa-Lizarralde, T.Diercks, J.P.Lopez-Alonso, J.L.Lavin, T.Kaminishi, R.Capuni, N.Dhimole, E.De Astigarraga, D.Gil-Carton, P.Fucini, S.R.Connell. A Conserved Rrna Switch Is Central to Decoding Site Maturation on the Small Ribosomal Subunit. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34088665
DOI: 10.1126/SCIADV.ABF7547