Zinc in PDB 7msx: Sars-Cov-2 NSP2

Zinc Binding Sites:

The binding sites of Zinc atom in the Sars-Cov-2 NSP2 (pdb code 7msx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Sars-Cov-2 NSP2, PDB code: 7msx:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7msx

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Zinc binding site 1 out of 3 in the Sars-Cov-2 NSP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 NSP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:40.9
occ:1.00
SG A:CYS143 2.5 38.0 1.0
SG A:CYS146 2.5 47.4 1.0
SG A:CYS161 2.5 42.8 1.0
SG A:CYS164 2.6 44.3 1.0
CB A:CYS143 3.3 39.4 1.0
CB A:CYS146 3.4 38.8 1.0
CB A:CYS161 3.5 37.1 1.0
CB A:CYS164 3.7 35.6 1.0
N A:CYS164 4.0 34.9 1.0
N A:CYS146 4.2 45.2 1.0
CB A:PHE163 4.3 34.5 1.0
CA A:CYS146 4.4 42.4 1.0
CA A:CYS164 4.5 32.5 1.0
OG1 A:THR166 4.5 38.5 1.0
CB A:HIS145 4.5 46.2 1.0
CA A:CYS143 4.8 40.2 1.0
C A:HIS145 4.8 44.1 1.0
C A:PHE163 4.8 35.8 1.0
CA A:CYS161 4.9 32.4 1.0
CA A:PHE163 4.9 33.7 1.0
O A:CYS143 5.0 45.8 1.0

Zinc binding site 2 out of 3 in 7msx

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Zinc binding site 2 out of 3 in the Sars-Cov-2 NSP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2 NSP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn702

b:41.8
occ:1.00
NE2 A:HIS202 2.1 52.8 1.0
SG A:CYS236 2.4 52.6 1.0
SG A:CYS190 2.5 54.4 1.0
SG A:CYS193 2.5 70.4 1.0
CE1 A:HIS202 3.0 52.7 1.0
CB A:CYS236 3.1 43.3 1.0
CD2 A:HIS202 3.3 54.2 1.0
CB A:CYS190 3.7 47.5 1.0
CB A:CYS193 4.0 59.1 1.0
ND1 A:HIS202 4.2 56.8 1.0
CG A:HIS202 4.3 57.2 1.0
N A:CYS193 4.4 55.2 1.0
CD1 A:TYR207 4.5 49.2 1.0
CA A:CYS236 4.6 44.1 1.0
OH A:TYR233 4.6 43.3 1.0
CB A:ALA192 4.6 57.7 1.0
CA A:CYS193 4.7 57.1 1.0
CE1 A:TYR207 5.0 44.4 1.0

Zinc binding site 3 out of 3 in 7msx

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Zinc binding site 3 out of 3 in the Sars-Cov-2 NSP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Sars-Cov-2 NSP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn703

b:70.2
occ:1.00
NE2 A:HIS56 2.2 38.7 1.0
ND1 A:HIS54 2.3 53.3 1.0
SG A:CYS51 2.6 45.6 1.0
SG A:CYS20 2.6 45.2 1.0
CG A:HIS54 2.8 51.3 1.0
CE1 A:HIS54 3.0 57.8 1.0
CE1 A:HIS56 3.1 39.6 1.0
CD2 A:HIS56 3.2 40.2 1.0
CB A:HIS54 3.2 50.4 1.0
CB A:CYS51 3.3 49.5 1.0
CB A:CYS20 3.3 46.6 1.0
CD2 A:HIS54 3.6 54.8 1.0
NE2 A:HIS54 3.6 62.7 1.0
ND1 A:HIS56 4.2 38.3 1.0
CG A:HIS56 4.3 37.6 1.0
CA A:HIS54 4.6 48.4 1.0
CA A:CYS20 4.8 42.4 1.0
CA A:CYS51 4.8 51.7 1.0
N A:HIS54 4.9 52.0 1.0

Reference:

Qcrg Structural Biology Consortium, Qcrg Structural Biology Consortium. N/A N/A.
Page generated: Mon Jul 12 17:25:51 2021

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