Zinc in PDB 7msw: Full Length Sars-Cov-2 NSP2

Zinc Binding Sites:

The binding sites of Zinc atom in the Full Length Sars-Cov-2 NSP2 (pdb code 7msw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Full Length Sars-Cov-2 NSP2, PDB code: 7msw:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7msw

Go back to Zinc Binding Sites List in 7msw
Zinc binding site 1 out of 3 in the Full Length Sars-Cov-2 NSP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Full Length Sars-Cov-2 NSP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:55.3
occ:1.00
OE2 A:GLU148 1.9 76.7 1.0
SG A:CYS146 2.6 79.1 1.0
SG A:CYS161 2.6 64.9 1.0
HB2 A:CYS146 2.7 85.0 1.0
SG A:CYS143 2.8 70.3 1.0
SG A:CYS164 2.9 64.7 1.0
CD A:GLU148 3.0 80.3 1.0
HB3 A:CYS143 3.1 83.1 1.0
CB A:CYS146 3.2 70.8 1.0
HB2 A:PHE163 3.3 65.7 1.0
HB3 A:CYS164 3.3 69.4 1.0
CB A:CYS143 3.4 69.2 1.0
OE1 A:GLU148 3.4 74.5 1.0
HB2 A:CYS143 3.5 83.1 1.0
HB3 A:CYS161 3.6 70.6 1.0
HG A:CYS161 3.6 77.8 1.0
H A:CYS164 3.7 68.3 1.0
CB A:CYS164 3.7 57.8 1.0
HB3 A:CYS146 3.7 85.0 1.0
CB A:CYS161 3.7 58.9 1.0
HG A:CYS143 3.9 84.4 1.0
HG A:CYS146 3.9 94.9 1.0
HB2 A:CYS161 4.0 70.6 1.0
HG A:CYS164 4.1 77.6 1.0
N A:CYS164 4.2 56.9 1.0
CG A:GLU148 4.2 74.0 1.0
HB3 A:HIS145 4.2 81.7 1.0
HD2 A:PHE163 4.2 67.3 1.0
HG2 A:GLU148 4.3 88.9 1.0
CB A:PHE163 4.3 54.8 1.0
H A:CYS146 4.4 82.7 1.0
CA A:CYS146 4.4 71.8 1.0
HB3 A:PHE163 4.4 65.7 1.0
N A:CYS146 4.5 68.9 1.0
HB2 A:CYS164 4.5 69.4 1.0
CA A:CYS164 4.6 53.9 1.0
HG3 A:GLU148 4.6 88.9 1.0
H A:GLU148 4.6 83.6 1.0
HD2 A:HIS145 4.6 80.9 1.0
H A:PHE163 4.7 61.4 1.0
H A:GLY147 4.7 86.5 1.0
CA A:CYS143 4.8 64.8 1.0
C A:PHE163 5.0 55.7 1.0

Zinc binding site 2 out of 3 in 7msw

Go back to Zinc Binding Sites List in 7msw
Zinc binding site 2 out of 3 in the Full Length Sars-Cov-2 NSP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Full Length Sars-Cov-2 NSP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn702

b:78.7
occ:1.00
NE2 A:HIS202 2.2 93.4 1.0
SG A:CYS190 2.5 82.0 1.0
SG A:CYS236 2.5 102.0 1.0
SG A:CYS193 2.5 116.3 1.0
HB3 A:CYS236 2.7 104.7 1.0
CB A:CYS236 3.0 87.2 1.0
CE1 A:HIS202 3.0 95.3 1.0
HB2 A:CYS236 3.1 104.7 1.0
HE1 A:HIS202 3.2 114.4 1.0
CD2 A:HIS202 3.3 101.0 1.0
HG A:CYS193 3.5 139.6 1.0
HG A:CYS190 3.5 98.5 1.0
HB3 A:CYS190 3.5 113.7 1.0
HD2 A:HIS202 3.5 121.2 1.0
CB A:CYS190 3.6 94.8 1.0
HG A:CYS236 3.7 122.4 1.0
HB2 A:CYS190 3.7 113.7 1.0
HB3 A:ALA192 3.7 127.5 1.0
HD1 A:TYR207 3.9 109.6 1.0
CB A:CYS193 4.0 105.1 1.0
HB2 A:CYS193 4.0 126.1 1.0
H A:CYS193 4.0 123.3 1.0
ND1 A:HIS202 4.2 98.7 1.0
HA A:LYS239 4.3 113.0 1.0
HB2 A:ALA241 4.3 94.0 1.0
CG A:HIS202 4.4 101.2 1.0
N A:CYS193 4.4 102.8 1.0
HA A:PRO200 4.5 129.1 1.0
CA A:CYS236 4.5 80.3 1.0
CD1 A:TYR207 4.7 91.3 1.0
HE1 A:TYR207 4.7 108.7 1.0
CA A:CYS193 4.7 104.4 1.0
HA A:ALA241 4.7 92.5 1.0
HB3 A:CYS193 4.8 126.1 1.0
HA A:CYS236 4.8 96.4 1.0
CB A:ALA192 4.8 106.3 1.0
HA A:CYS193 4.8 125.3 1.0
O A:CYS240 4.9 87.9 1.0
OH A:TYR233 5.0 89.6 1.0
CA A:CYS190 5.0 93.5 1.0

Zinc binding site 3 out of 3 in 7msw

Go back to Zinc Binding Sites List in 7msw
Zinc binding site 3 out of 3 in the Full Length Sars-Cov-2 NSP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Full Length Sars-Cov-2 NSP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn703

b:105.3
occ:1.00
ND1 A:HIS54 2.2 119.2 1.0
NE2 A:HIS56 2.2 96.2 1.0
SG A:CYS51 2.6 126.1 1.0
SG A:CYS20 2.6 90.9 1.0
HB2 A:HIS54 2.7 140.1 1.0
CG A:HIS54 2.9 123.5 1.0
HB3 A:CYS51 2.9 142.9 1.0
HB2 A:CYS20 3.1 111.4 1.0
CB A:CYS51 3.1 119.1 1.0
CE1 A:HIS56 3.1 101.3 1.0
HB2 A:CYS51 3.1 142.9 1.0
CE1 A:HIS54 3.1 122.2 1.0
CB A:HIS54 3.2 116.8 1.0
CD2 A:HIS56 3.2 94.4 1.0
CB A:CYS20 3.3 92.9 1.0
HG A:CYS20 3.3 109.1 1.0
HD2 A:HIS56 3.4 113.2 1.0
HE1 A:HIS56 3.4 121.6 1.0
HB3 A:CYS20 3.4 111.4 1.0
HB3 A:HIS54 3.4 140.1 1.0
HE1 A:HIS54 3.5 146.7 1.0
HG A:CYS51 3.8 151.3 1.0
CD2 A:HIS54 4.0 120.5 1.0
NE2 A:HIS54 4.1 125.3 1.0
ND1 A:HIS56 4.3 96.1 1.0
CG A:HIS56 4.3 91.7 1.0
CA A:HIS54 4.6 120.2 1.0
CA A:CYS51 4.6 120.5 1.0
HD11 A:ILE21 4.7 119.5 1.0
CA A:CYS20 4.8 93.4 1.0
HD13 A:ILE21 4.8 119.5 1.0
HD2 A:ARG4 4.8 119.8 1.0
HD23 A:LEU18 4.9 111.7 1.0
HD2 A:HIS54 4.9 144.6 1.0
HD3 A:ARG4 4.9 119.8 1.0
HA A:CYS51 5.0 144.6 1.0
HE2 A:HIS54 5.0 150.4 1.0
H A:HIS54 5.0 143.0 1.0

Reference:

Qcrg Structural Biology Consortium, Qcrg Structural Biology Consortium. N/A N/A.
Page generated: Mon Jul 12 17:25:57 2021

Last articles

Zn in 7NA9
Zn in 7LZP
Zn in 7M1H
Zn in 7L6V
Zn in 7CM0
V in 7P8R
Ni in 7L19
Na in 7T88
Na in 7MJ5
Na in 7L00
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy