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Zinc in PDB 7m1h: Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12

Enzymatic activity of Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12

All present enzymatic activity of Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12:
3.4.24.69;

Protein crystallography data

The structure of Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12, PDB code: 7m1h was solved by K.Lam, R.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 115.87 / 2.78
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.59, 93.983, 231.748, 90, 90, 90
R / Rfree (%) 21.7 / 24.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12 (pdb code 7m1h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12, PDB code: 7m1h:

Zinc binding site 1 out of 1 in 7m1h

Go back to Zinc Binding Sites List in 7m1h
Zinc binding site 1 out of 1 in the Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lc/A-Jpu-C10-Jpu-D12-Jpu-B8-Jpu-G3-Cia-F12-Cia- D12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:46.9
occ:1.00
OE1 A:GLU262 2.1 70.2 1.0
NE2 A:HIS227 2.1 77.0 1.0
NE2 A:HIS223 2.1 77.0 1.0
OE2 A:GLU262 2.4 66.0 1.0
CD A:GLU262 2.6 62.2 1.0
CD2 A:HIS223 2.9 70.2 1.0
CD2 A:HIS227 2.9 70.1 1.0
CE1 A:HIS227 3.2 70.8 1.0
CE1 A:HIS223 3.3 70.3 1.0
OE2 A:GLU224 4.0 53.4 1.0
CG A:GLU262 4.1 56.0 1.0
CG A:HIS227 4.1 68.0 1.0
CG A:HIS223 4.1 67.9 1.0
ND1 A:HIS227 4.1 70.5 1.0
ND1 A:HIS223 4.3 70.3 1.0
O A:HOH602 4.3 46.9 1.0
OE1 A:GLU224 4.6 54.9 1.0
CD A:GLU224 4.6 54.1 1.0
CE1 A:TYR366 4.7 49.8 1.0
CG2 A:THR265 4.7 39.7 1.0
CB A:GLU262 4.7 53.0 1.0
OH A:TYR366 4.7 50.2 1.0
CA A:GLU262 4.8 53.9 1.0
CB A:THR265 4.9 53.3 1.0

Reference:

K.Lam, R.Jin. Probing the Structure and Function of the Protease Domain of Botulinum Neurotoxins Using Single-Domain Antibodies. Plos Pathog. 2021.
ISSN: ESSN 1553-7374
Page generated: Fri Dec 24 10:38:49 2021

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