Zinc in PDB 7lyt: Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna

Other elements in 7lyt:

The structure of Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna (pdb code 7lyt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna, PDB code: 7lyt:

Zinc binding site 1 out of 1 in 7lyt

Go back to Zinc Binding Sites List in 7lyt
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:84.5
occ:1.00
SG A:CYS685 2.3 72.2 1.0
SG A:CYS670 2.3 74.3 1.0
SG A:CYS688 2.3 73.1 1.0
SG A:CYS667 2.3 74.4 1.0
HB3 A:CYS667 2.9 74.4 1.0
CB A:CYS667 3.0 74.4 1.0
HB2 A:CYS667 3.0 74.4 1.0
HB2 A:CYS685 3.1 72.2 1.0
CB A:CYS685 3.1 72.2 1.0
HB3 A:CYS685 3.2 72.2 1.0
H A:CYS688 3.3 73.1 1.0
H A:CYS670 3.5 74.3 1.0
CB A:CYS670 3.7 74.3 1.0
HB3 A:CYS670 3.7 74.3 1.0
HB2 A:LYS669 3.8 72.0 1.0
CB A:CYS688 4.0 73.1 1.0
N A:CYS688 4.1 73.1 1.0
HB2 A:SER687 4.1 73.3 1.0
N A:CYS670 4.1 74.3 1.0
O A:CYS688 4.2 73.1 1.0
HB3 A:CYS688 4.3 73.1 1.0
H A:SER687 4.3 73.3 1.0
HB2 A:CYS670 4.4 74.3 1.0
CA A:CYS670 4.5 74.3 1.0
CA A:CYS667 4.5 74.4 1.0
CA A:CYS688 4.5 73.1 1.0
H A:LYS669 4.6 72.0 1.0
HB2 A:CYS688 4.6 73.1 1.0
CA A:CYS685 4.6 72.2 1.0
HB3 A:HIS672 4.6 75.2 1.0
O A:CYS670 4.7 74.3 1.0
HZ A:PHE683 4.7 71.7 1.0
C A:CYS688 4.7 73.1 1.0
CB A:LYS669 4.8 72.0 1.0
HA A:CYS667 4.8 74.4 1.0
HA A:CYS685 4.8 72.2 1.0
HD3 A:LYS669 4.9 72.0 1.0
C A:CYS670 5.0 74.3 1.0

Reference:

P.Pausch, K.M.Soczek, D.A.Herbst, C.A.Tsuchida, B.Al-Shayeb, J.F.Banfield, E.Nogales, J.A.Doudna. Dna Interference States of the Hypercompact Crispr-Casphi Effector Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00632-3
Page generated: Sun Aug 22 09:48:08 2021

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