Zinc in PDB 7lyt: Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna

Other elements in 7lyt:

The structure of Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna (pdb code 7lyt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna, PDB code: 7lyt:

Zinc binding site 1 out of 1 in 7lyt

Go back to Zinc Binding Sites List in 7lyt
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna and Phosphorothioate-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:84.5
occ:1.00
SG A:CYS685 2.3 72.2 1.0
SG A:CYS670 2.3 74.3 1.0
SG A:CYS688 2.3 73.1 1.0
SG A:CYS667 2.3 74.4 1.0
HB3 A:CYS667 2.9 74.4 1.0
CB A:CYS667 3.0 74.4 1.0
HB2 A:CYS667 3.0 74.4 1.0
HB2 A:CYS685 3.1 72.2 1.0
CB A:CYS685 3.1 72.2 1.0
HB3 A:CYS685 3.2 72.2 1.0
H A:CYS688 3.3 73.1 1.0
H A:CYS670 3.5 74.3 1.0
CB A:CYS670 3.7 74.3 1.0
HB3 A:CYS670 3.7 74.3 1.0
HB2 A:LYS669 3.8 72.0 1.0
CB A:CYS688 4.0 73.1 1.0
N A:CYS688 4.1 73.1 1.0
HB2 A:SER687 4.1 73.3 1.0
N A:CYS670 4.1 74.3 1.0
O A:CYS688 4.2 73.1 1.0
HB3 A:CYS688 4.3 73.1 1.0
H A:SER687 4.3 73.3 1.0
HB2 A:CYS670 4.4 74.3 1.0
CA A:CYS670 4.5 74.3 1.0
CA A:CYS667 4.5 74.4 1.0
CA A:CYS688 4.5 73.1 1.0
H A:LYS669 4.6 72.0 1.0
HB2 A:CYS688 4.6 73.1 1.0
CA A:CYS685 4.6 72.2 1.0
HB3 A:HIS672 4.6 75.2 1.0
O A:CYS670 4.7 74.3 1.0
HZ A:PHE683 4.7 71.7 1.0
C A:CYS688 4.7 73.1 1.0
CB A:LYS669 4.8 72.0 1.0
HA A:CYS667 4.8 74.4 1.0
HA A:CYS685 4.8 72.2 1.0
HD3 A:LYS669 4.9 72.0 1.0
C A:CYS670 5.0 74.3 1.0

Reference:

P.Pausch, K.M.Soczek, D.A.Herbst, C.A.Tsuchida, B.Al-Shayeb, J.F.Banfield, E.Nogales, J.A.Doudna. Dna Interference States of the Hypercompact Crispr-Casphi Effector Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00632-3
Page generated: Sun Aug 22 09:48:08 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy