Zinc in PDB 7lre: Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement (pdb code 7lre). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement, PDB code: 7lre:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7lre

Go back to Zinc Binding Sites List in 7lre
Zinc binding site 1 out of 2 in the Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:57.1
occ:1.00
ND1 A:HIS275 2.1 40.5 1.0
SG A:CYS277 2.3 52.3 1.0
SG A:CYS311 2.3 41.1 1.0
SG A:CYS312 2.3 39.9 1.0
CE1 A:HIS275 2.9 40.5 1.0
CG A:HIS275 3.2 40.5 1.0
CB A:CYS312 3.3 39.9 1.0
CB A:CYS311 3.5 41.1 1.0
CB A:CYS277 3.7 52.3 1.0
CB A:HIS275 3.7 40.5 1.0
N A:CYS312 3.9 39.9 1.0
CA A:HIS275 4.0 40.5 1.0
C A:CYS311 4.1 41.1 1.0
NE2 A:HIS275 4.1 40.5 1.0
N A:CYS277 4.1 52.3 1.0
CD2 A:HIS275 4.2 40.5 1.0
CA A:CYS312 4.2 39.9 1.0
N A:PHE276 4.3 42.6 1.0
CA A:CYS311 4.4 41.1 1.0
O A:GLU279 4.4 58.0 1.0
CA A:CYS277 4.5 52.3 1.0
O A:CYS311 4.5 41.1 1.0
C A:HIS275 4.6 40.5 1.0
CE2 A:PHE310 4.7 37.1 1.0

Zinc binding site 2 out of 2 in 7lre

Go back to Zinc Binding Sites List in 7lre
Zinc binding site 2 out of 2 in the Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em of the SLFN12-PDE3A Complex: SLFN12 Body Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:57.2
occ:1.00
ND1 B:HIS275 2.1 41.2 1.0
SG B:CYS277 2.3 53.5 1.0
SG B:CYS311 2.3 41.6 1.0
SG B:CYS312 2.3 40.3 1.0
CE1 B:HIS275 2.9 41.2 1.0
CG B:HIS275 3.2 41.2 1.0
CB B:CYS312 3.3 40.3 1.0
CB B:CYS311 3.5 41.6 1.0
CB B:CYS277 3.7 53.5 1.0
CB B:HIS275 3.7 41.2 1.0
N B:CYS312 3.9 40.3 1.0
CA B:HIS275 4.0 41.2 1.0
C B:CYS311 4.1 41.6 1.0
NE2 B:HIS275 4.1 41.2 1.0
N B:CYS277 4.1 53.5 1.0
CD2 B:HIS275 4.2 41.2 1.0
CA B:CYS312 4.2 40.3 1.0
N B:PHE276 4.3 43.1 1.0
CA B:CYS311 4.4 41.6 1.0
O B:GLU279 4.4 59.4 1.0
CA B:CYS277 4.5 53.5 1.0
O B:CYS311 4.5 41.6 1.0
C B:HIS275 4.6 41.2 1.0
CE2 B:PHE310 4.7 37.5 1.0

Reference:

C.W.Garvie, J.R.Fuller, C.W.Garvie, C.T.Lemke. N/A N/A.
Page generated: Mon Jul 12 17:23:30 2021

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