Zinc in PDB 7l6r: Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn).

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn)., PDB code: 7l6r was solved by G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.95 / 1.98
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 168.757, 168.757, 52.272, 90, 90, 120
R / Rfree (%) 15 / 16.6

Other elements in 7l6r:

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn). also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Manganese (Mn) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn). (pdb code 7l6r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn)., PDB code: 7l6r:

Zinc binding site 1 out of 1 in 7l6r

Go back to Zinc Binding Sites List in 7l6r
Zinc binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn4401

b:39.0
occ:0.50
NE2 B:HIS4336 2.0 90.9 1.0
SG B:CYS4327 2.3 53.7 1.0
SG B:CYS4343 2.3 65.9 1.0
SG B:CYS4330 2.3 59.4 1.0
CD2 B:HIS4336 3.0 91.2 1.0
CE1 B:HIS4336 3.0 91.8 1.0
CB B:CYS4327 3.2 52.4 1.0
CB B:CYS4343 3.2 75.0 1.0
CB B:CYS4330 3.4 57.0 1.0
N B:CYS4330 3.6 59.4 1.0
CA B:CYS4330 4.0 57.6 1.0
ND1 B:HIS4336 4.1 92.0 1.0
CG B:HIS4336 4.1 91.7 1.0
CA B:CYS4343 4.3 81.0 1.0
CA B:CYS4327 4.6 50.9 1.0
CB B:TYR4329 4.6 67.1 1.0
C B:TYR4329 4.6 62.5 1.0
CB B:LYS4346 4.8 52.9 1.0
CA B:TYR4329 5.0 62.9 1.0
N B:LYS4346 5.0 47.8 1.0

Reference:

G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Manganese (Mn). To Be Published.
Page generated: Mon Jan 25 16:48:02 2021

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