Zinc in PDB 7l3o: Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II

Enzymatic activity of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II

All present enzymatic activity of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II:
6.1.1.3;

Protein crystallography data

The structure of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II, PDB code: 7l3o was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.26 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 65.73, 67.45, 143.18, 91.59, 97.53, 120.78
R / Rfree (%) 17.8 / 21.3

Other elements in 7l3o:

The structure of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II (pdb code 7l3o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II, PDB code: 7l3o:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7l3o

Go back to Zinc Binding Sites List in 7l3o
Zinc binding site 1 out of 4 in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn800

b:33.4
occ:1.00
 NE2 A:HIS477 2.2 36.1 1.0
SG A:CYS426 2.2 33.6 1.0
ND1 A:HIS629 2.3 29.6 1.0
O A:HOH1100 2.5 38.4 1.0
O A:HOH1019 2.6 39.8 1.0
CD2 A:HIS477 3.2 32.5 1.0
CE1 A:HIS629 3.2 30.5 1.0
CE1 A:HIS477 3.2 31.7 1.0
CG A:HIS629 3.2 29.6 1.0
CB A:CYS426 3.3 33.6 1.0
CB A:HIS629 3.5 28.8 1.0
O A:HOH905 3.9 38.9 1.0
CA A:CYS426 4.1 31.3 1.0
OH A:TYR553 4.2 39.1 1.0
NE2 A:HIS629 4.3 36.5 1.0
N A:CYS426 4.3 33.1 1.0
ND1 A:HIS477 4.3 34.5 1.0
CD2 A:HIS629 4.3 30.7 1.0
CG A:HIS477 4.3 35.1 1.0
OD1 A:ASP475 4.4 37.4 1.0
OD2 A:ASP475 4.5 34.7 1.0
O A:HOH1029 4.5 44.4 1.0
CA A:HIS629 4.6 30.2 1.0
OE1 A:GLN575 4.7 36.5 1.0
CG A:ASP475 4.9 37.2 1.0
CZ A:TYR553 4.9 36.5 1.0

Zinc binding site 2 out of 4 in 7l3o

Go back to Zinc Binding Sites List in 7l3o
Zinc binding site 2 out of 4 in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn800

b:32.5
occ:1.00
 O B:HOH920 2.0 31.5 1.0
NE2 B:HIS477 2.2 31.9 1.0
ND1 B:HIS629 2.2 25.5 1.0
SG B:CYS426 2.3 31.2 1.0
CD2 B:HIS477 3.1 28.2 1.0
CE1 B:HIS477 3.2 23.2 1.0
CE1 B:HIS629 3.2 30.2 1.0
CG B:HIS629 3.2 29.5 1.0
CB B:CYS426 3.2 25.6 1.0
O B:HOH1157 3.3 40.4 1.0
CB B:HIS629 3.5 25.1 1.0
O B:HOH904 3.9 32.9 1.0
CA B:CYS426 4.0 25.9 1.0
OD1 B:ASP475 4.1 32.0 1.0
N B:CYS426 4.2 25.5 1.0
ND1 B:HIS477 4.3 23.4 1.0
CG B:HIS477 4.3 29.4 1.0
NE2 B:HIS629 4.3 30.5 1.0
OD2 B:ASP475 4.3 32.0 1.0
CD2 B:HIS629 4.3 27.9 1.0
O B:HOH1111 4.4 37.3 1.0
CA B:HIS629 4.5 24.2 1.0
O B:HOH1035 4.6 33.1 1.0
CG B:ASP475 4.7 31.4 1.0

Zinc binding site 3 out of 4 in 7l3o

Go back to Zinc Binding Sites List in 7l3o
Zinc binding site 3 out of 4 in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn800

b:35.2
occ:1.00
 O C:HOH945 2.1 30.7 1.0
NE2 C:HIS477 2.2 30.9 1.0
ND1 C:HIS629 2.3 33.5 1.0
SG C:CYS426 2.3 34.2 1.0
CD2 C:HIS477 3.1 32.3 1.0
CE1 C:HIS477 3.2 29.4 1.0
CE1 C:HIS629 3.2 38.4 1.0
CG C:HIS629 3.2 29.6 1.0
CB C:CYS426 3.3 29.9 1.0
CB C:HIS629 3.5 27.2 1.0
CA C:CYS426 4.1 28.7 1.0
OD1 C:ASP475 4.1 29.7 1.0
O C:HOH946 4.2 34.7 1.0
CG C:HIS477 4.3 32.3 1.0
ND1 C:HIS477 4.3 32.7 1.0
N C:CYS426 4.3 26.1 1.0
NE2 C:HIS629 4.3 38.7 1.0
CD2 C:HIS629 4.4 35.8 1.0
OD2 C:ASP475 4.4 34.9 1.0
CA C:HIS629 4.5 26.4 1.0
CG C:ASP475 4.7 31.6 1.0
O C:HOH1039 5.0 41.2 1.0

Zinc binding site 4 out of 4 in 7l3o

Go back to Zinc Binding Sites List in 7l3o
Zinc binding site 4 out of 4 in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn800

b:40.8
occ:1.00
 O D:HOH970 2.2 37.2 1.0
NE2 D:HIS477 2.2 33.1 1.0
ND1 D:HIS629 2.3 34.6 1.0
SG D:CYS426 2.3 41.2 1.0
CE1 D:HIS477 3.1 32.8 1.0
CE1 D:HIS629 3.2 37.8 1.0
CD2 D:HIS477 3.2 35.3 1.0
CB D:CYS426 3.2 31.3 1.0
CG D:HIS629 3.3 36.5 1.0
CB D:HIS629 3.7 31.7 1.0
CA D:CYS426 4.1 34.6 1.0
O D:HOH939 4.1 36.3 1.0
OD1 D:ASP475 4.2 36.4 1.0
ND1 D:HIS477 4.2 36.8 1.0
N D:CYS426 4.3 33.0 1.0
CG D:HIS477 4.3 37.4 1.0
OD2 D:ASP475 4.3 35.6 1.0
NE2 D:HIS629 4.3 40.1 1.0
CD2 D:HIS629 4.4 38.0 1.0
CA D:HIS629 4.6 33.4 1.0
CG D:ASP475 4.7 36.4 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II To Be Published.
Page generated: Tue Oct 29 22:36:45 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy