Zinc in PDB 7kzh: Zinc Finger Antiviral Protein (Zap) Central Domain

Protein crystallography data

The structure of Zinc Finger Antiviral Protein (Zap) Central Domain, PDB code: 7kzh was solved by O.P.Pornillos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.81 / 2.49
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.637, 89.637, 53.055, 90, 90, 120
R / Rfree (%) 22.6 / 26.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc Finger Antiviral Protein (Zap) Central Domain (pdb code 7kzh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zinc Finger Antiviral Protein (Zap) Central Domain, PDB code: 7kzh:

Zinc binding site 1 out of 1 in 7kzh

Go back to Zinc Binding Sites List in 7kzh
Zinc binding site 1 out of 1 in the Zinc Finger Antiviral Protein (Zap) Central Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc Finger Antiviral Protein (Zap) Central Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:43.2
occ:1.00
NE2 A:HIS531 2.0 30.2 1.0
SG A:CYS521 2.3 44.0 1.0
SG A:CYS513 2.3 40.0 1.0
SG A:CYS527 2.3 53.1 1.0
HB2 A:CYS521 2.9 55.2 1.0
HB2 A:CYS527 2.9 77.7 1.0
CE1 A:HIS531 3.0 37.3 1.0
HB2 A:CYS513 3.0 41.0 1.0
CD2 A:HIS531 3.1 39.4 1.0
HE1 A:HIS531 3.1 44.8 1.0
CB A:CYS521 3.1 46.0 1.0
CB A:CYS527 3.1 64.7 1.0
CB A:CYS513 3.2 34.2 1.0
HD2 A:HIS531 3.3 47.3 1.0
HB3 A:CYS527 3.3 77.7 1.0
HB3 A:CYS513 3.4 41.0 1.0
HB3 A:CYS521 3.5 55.2 1.0
HB2 A:LYS529 3.8 62.6 1.0
HB2 A:HIS516 3.8 41.6 1.0
ND1 A:HIS531 4.1 32.8 1.0
CG A:HIS531 4.2 31.9 1.0
HB2 A:LEU523 4.2 75.4 1.0
HB2 A:ASP515 4.2 44.4 1.0
HD2 A:LYS529 4.3 59.0 1.0
H A:HIS516 4.3 46.1 1.0
CA A:CYS521 4.5 43.9 1.0
HA A:CYS521 4.5 52.7 1.0
H A:LYS529 4.5 67.5 1.0
CA A:CYS527 4.6 57.0 1.0
CA A:CYS513 4.6 32.7 1.0
HD22 A:LEU523 4.7 74.3 1.0
CB A:HIS516 4.7 34.7 1.0
HA A:CYS527 4.7 68.4 1.0
HA A:CYS513 4.8 39.2 1.0
HB3 A:HIS516 4.8 41.6 1.0
CB A:LYS529 4.8 52.1 1.0
HD1 A:HIS531 4.9 39.3 1.0
N A:HIS516 4.9 38.4 1.0
H A:LEU523 5.0 74.1 1.0

Reference:

G.Xue, O.Pornillos. Zinc Finger Antiviral Protein (Zap) Central Domain To Be Published.
Page generated: Fri Dec 17 11:50:23 2021

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