Zinc in PDB 7kui: Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.

Other elements in 7kui:

The structure of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. (pdb code 7kui). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc., PDB code: 7kui:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7kui

Go back to Zinc Binding Sites List in 7kui
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:209.2
occ:1.00
NE2 A:HIS9 2.0 176.6 1.0
ND1 A:HIS13 2.0 167.1 1.0
SG A:CYS40 2.3 176.4 1.0
SG A:CYS37 2.3 169.6 1.0
CB A:CYS37 2.7 169.6 1.0
CE1 A:HIS13 2.8 167.1 1.0
CD2 A:HIS9 2.9 176.6 1.0
CE1 A:HIS9 3.1 176.6 1.0
CG A:HIS13 3.2 167.1 1.0
CB A:CYS40 3.5 176.4 1.0
CB A:HIS13 3.7 167.1 1.0
CA A:HIS13 4.0 167.1 1.0
NE2 A:HIS13 4.0 167.1 1.0
CG A:HIS9 4.0 176.6 1.0
ND1 A:HIS9 4.1 176.6 1.0
N A:CYS40 4.2 176.4 1.0
CA A:CYS37 4.2 169.6 1.0
CD2 A:HIS13 4.2 167.1 1.0
CA A:CYS40 4.3 176.4 1.0
O A:HIS9 4.6 176.6 1.0
O A:CYS37 4.7 169.6 1.0
C A:CYS37 4.7 169.6 1.0
C A:HIS13 4.8 167.1 1.0
O A:VAL34 4.9 183.0 1.0
N A:CYS37 5.0 169.6 1.0
C A:HIS39 5.0 166.2 1.0
CG1 E:VAL169 5.0 150.8 1.0

Zinc binding site 2 out of 2 in 7kui

Go back to Zinc Binding Sites List in 7kui
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn301

b:216.6
occ:1.00
NE2 E:HIS9 2.1 185.1 1.0
ND1 E:HIS13 2.1 173.0 1.0
SG E:CYS37 2.3 173.7 1.0
SG E:CYS40 2.3 184.1 1.0
CB E:CYS37 2.7 173.7 1.0
CE1 E:HIS13 2.8 173.0 1.0
CE1 E:HIS9 2.8 185.1 1.0
CD2 E:HIS9 3.0 185.1 1.0
CG E:HIS13 3.2 173.0 1.0
CB E:CYS40 3.6 184.1 1.0
CB E:HIS13 3.8 173.0 1.0
ND1 E:HIS9 3.8 185.1 1.0
CG E:HIS9 4.0 185.1 1.0
CA E:HIS13 4.0 173.0 1.0
NE2 E:HIS13 4.0 173.0 1.0
N E:CYS40 4.1 184.1 1.0
CA E:CYS37 4.2 173.7 1.0
CD2 E:HIS13 4.2 173.0 1.0
CA E:CYS40 4.3 184.1 1.0
O E:HIS9 4.5 185.1 1.0
C E:HIS39 4.8 170.2 1.0
C E:CYS37 4.8 173.7 1.0
O E:VAL34 4.8 185.0 1.0
C E:HIS13 4.8 173.0 1.0
O E:CYS37 4.8 173.7 1.0
CB E:HIS39 4.9 170.2 1.0
N E:CYS37 5.0 173.7 1.0

Reference:

K.K.Pandey, S.Bera, K.Shi, H.Aihara, D.P.Grandgenett, M.J.Rau, A.V.Oleru, J.A.J.Fitzpatrick, A.N.Engelman. Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 To Be Published.
Page generated: Sat Apr 3 18:36:53 2021

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy