Zinc in PDB 7bp1: Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol

Protein crystallography data

The structure of Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol, PDB code: 7bp1 was solved by M.K.Song, J.H.Feng, W.D.Liu, Q.Q.Wu, D.M.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.87 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.020, 131.374, 141.007, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol (pdb code 7bp1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol, PDB code: 7bp1:

Zinc binding site 1 out of 1 in 7bp1

Go back to Zinc Binding Sites List in 7bp1
Zinc binding site 1 out of 1 in the Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn402

b:86.4
occ:1.00
O C:HOH674 1.9 35.6 1.0
OE2 C:GLU9 2.0 39.3 1.0
OD1 C:ASP292 2.1 34.5 1.0
NE2 C:HIS168 2.1 28.2 1.0
O4 C:CAQ401 2.4 28.3 1.0
HO4 C:CAQ401 2.6 33.8 1.0
O C:HOH696 2.7 36.6 1.0
CD C:GLU9 3.0 33.3 1.0
CG C:ASP292 3.0 33.6 1.0
CE1 C:HIS168 3.1 26.6 1.0
CD2 C:HIS168 3.1 24.8 1.0
CG C:GLU9 3.4 29.7 1.0
OD2 C:ASP292 3.4 36.6 1.0
C4 C:CAQ401 3.7 28.6 1.0
H5 C:CAQ401 3.9 31.5 1.0
O C:HOH703 3.9 26.2 1.0
O C:HOH519 4.0 32.5 1.0
OE1 C:GLU9 4.2 27.5 1.0
O C:GLU9 4.2 32.4 1.0
ND1 C:HIS168 4.2 24.6 1.0
C5 C:CAQ401 4.2 26.4 1.0
CG C:HIS168 4.3 26.4 1.0
CB C:ASP292 4.3 27.3 1.0
HO3 C:CAQ401 4.4 35.0 1.0
CB C:GLU9 4.5 30.1 1.0
CA C:ASP292 4.5 28.5 1.0
NE2 C:HIS223 4.6 31.3 1.0
C3 C:CAQ401 4.8 27.2 1.0
CE1 C:HIS223 4.8 31.0 1.0
O B:HOH484 4.9 30.7 1.0
CD2 C:PHE295 4.9 28.3 1.0
C C:GLU9 4.9 30.9 1.0
O3 C:CAQ401 4.9 29.4 1.0
O C:HOH550 4.9 23.5 1.0

Reference:

M.Song, X.Zhang, W.Liu, J.Feng, Y.Cui, P.Yao, M.Wang, R.T.Guo, Q.Wu, D.Zhu. 2,3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum: Crystal Structures and Substrate Recognition Mechanism. Chembiochem V. 21 2950 2020.
ISSN: ESSN 1439-7633
PubMed: 32421914
DOI: 10.1002/CBIC.202000244
Page generated: Wed Dec 16 13:36:04 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy