Zinc in PDB 7bp1: Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol

The structure of Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol, PDB code: 7bp1 was solved by M.K.Song, J.H.Feng, W.D.Liu, Q.Q.Wu, D.M.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.87 / 1.97
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	77.020, 131.374, 141.007, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 19.6

The binding sites of Zinc atom in the Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol (pdb code 7bp1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol, PDB code: 7bp1:

Zinc binding site 1 out of 1 in the Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 2, 3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum in Complex with Catechol within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn402 b:86.4 occ:1.00 O C:HOH674 1.9 35.6 1.0 OE2 C:GLU9 2.0 39.3 1.0 OD1 C:ASP292 2.1 34.5 1.0 NE2 C:HIS168 2.1 28.2 1.0 O4 C:CAQ401 2.4 28.3 1.0 HO4 C:CAQ401 2.6 33.8 1.0 O C:HOH696 2.7 36.6 1.0 CD C:GLU9 3.0 33.3 1.0 CG C:ASP292 3.0 33.6 1.0 CE1 C:HIS168 3.1 26.6 1.0 CD2 C:HIS168 3.1 24.8 1.0 CG C:GLU9 3.4 29.7 1.0 OD2 C:ASP292 3.4 36.6 1.0 C4 C:CAQ401 3.7 28.6 1.0 H5 C:CAQ401 3.9 31.5 1.0 O C:HOH703 3.9 26.2 1.0 O C:HOH519 4.0 32.5 1.0 OE1 C:GLU9 4.2 27.5 1.0 O C:GLU9 4.2 32.4 1.0 ND1 C:HIS168 4.2 24.6 1.0 C5 C:CAQ401 4.2 26.4 1.0 CG C:HIS168 4.3 26.4 1.0 CB C:ASP292 4.3 27.3 1.0 HO3 C:CAQ401 4.4 35.0 1.0 CB C:GLU9 4.5 30.1 1.0 CA C:ASP292 4.5 28.5 1.0 NE2 C:HIS223 4.6 31.3 1.0 C3 C:CAQ401 4.8 27.2 1.0 CE1 C:HIS223 4.8 31.0 1.0 O B:HOH484 4.9 30.7 1.0 CD2 C:PHE295 4.9 28.3 1.0 C C:GLU9 4.9 30.9 1.0 O3 C:CAQ401 4.9 29.4 1.0 O C:HOH550 4.9 23.5 1.0

M.Song, X.Zhang, W.Liu, J.Feng, Y.Cui, P.Yao, M.Wang, R.T.Guo, Q.Wu, D.Zhu. 2,3-Dihydroxybenzoic Acid Decarboxylase From Fusarium Oxysporum: Crystal Structures and Substrate Recognition Mechanism. Chembiochem V. 21 2950 2020.
ISSN: ESSN 1439-7633
PubMed: 32421914
DOI: 10.1002/CBIC.202000244