Zinc in PDB 7auz: LTA4 Hydrolase in Complex with Compound LYS006

Enzymatic activity of LTA4 Hydrolase in Complex with Compound LYS006

All present enzymatic activity of LTA4 Hydrolase in Complex with Compound LYS006:
3.3.2.6;

Protein crystallography data

The structure of LTA4 Hydrolase in Complex with Compound LYS006, PDB code: 7auz was solved by H.Srinivas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.92 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.189, 86.7, 98.962, 90, 90, 90
R / Rfree (%) 17.1 / 20.6

Other elements in 7auz:

The structure of LTA4 Hydrolase in Complex with Compound LYS006 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Ytterbium (Yb) 3 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the LTA4 Hydrolase in Complex with Compound LYS006 (pdb code 7auz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the LTA4 Hydrolase in Complex with Compound LYS006, PDB code: 7auz:

Zinc binding site 1 out of 1 in 7auz

Go back to Zinc Binding Sites List in 7auz
Zinc binding site 1 out of 1 in the LTA4 Hydrolase in Complex with Compound LYS006


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LTA4 Hydrolase in Complex with Compound LYS006 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:31.5
occ:1.00
OE1 A:GLU318 1.9 24.8 1.0
O18 A:RZE708 2.0 38.3 1.0
NE2 A:HIS295 2.0 19.3 1.0
NE2 A:HIS299 2.1 16.3 1.0
CD A:GLU318 2.6 27.6 1.0
OE2 A:GLU318 2.7 26.2 1.0
C16 A:RZE708 2.7 32.0 1.0
O17 A:RZE708 2.8 33.6 1.0
CD2 A:HIS295 3.0 19.1 1.0
CE1 A:HIS295 3.0 18.6 1.0
CE1 A:HIS299 3.0 16.3 1.0
CD2 A:HIS299 3.2 16.4 1.0
CE2 A:TYR383 3.6 18.4 1.0
CG A:GLU318 4.0 23.0 1.0
OH A:TYR383 4.1 26.6 1.0
CG A:HIS295 4.1 18.3 1.0
C15 A:RZE708 4.1 30.8 1.0
ND1 A:HIS295 4.1 19.4 1.0
ND1 A:HIS299 4.2 18.1 1.0
N14 A:RZE708 4.2 22.1 1.0
CZ A:TYR383 4.2 26.8 1.0
CG A:HIS299 4.2 16.5 1.0
CG2 A:THR321 4.3 15.4 1.0
C13 A:RZE708 4.5 25.5 1.0
CD2 A:TYR383 4.5 17.6 1.0
O A:HOH841 4.6 26.3 1.0
CB A:THR321 4.6 17.3 1.0
OE1 A:GLU271 4.6 18.4 1.0
CB A:GLU318 4.7 18.3 1.0
CA A:GLU318 4.8 17.6 1.0
OE1 A:GLU296 4.9 20.8 1.0
OE2 A:GLU271 4.9 19.7 1.0
CD A:GLU271 5.0 26.2 1.0

Reference:

C.Markert, G.Thoma, H.Srinivas, B.Bollbuck, R.M.Luond, W.Miltz, R.Wal̈Chli, R.Wolf, J.Hinrichs, C.Bergsdorf, K.Azzaoui, C.A.Penno, K.Klein, N.Wack, P.Jag̈Er, F.Hasler, C.Beerli, P.Loetscher, J.Dawson, G.Wieczorek, S.Numao, A.Littlewood-Evans, T.A.Rohn. Discovery of LYS006, A Potent and Highly Selective Inhibitor of Leukotriene A4 Hydrolase. J.Med.Chem. 2021.
ISSN: ISSN 0022-2623
Page generated: Wed Mar 3 16:18:47 2021

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